Paenibacillus urinalis: PUW25_00875
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Entry
PUW25_00875 CDS
T08959
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pui
Paenibacillus urinalis
Pathway
pui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUW25_00875 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pui03019
]
PUW25_00875 (rnr)
03016 Transfer RNA biogenesis [BR:
pui03016
]
PUW25_00875 (rnr)
Enzymes [BR:
pui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PUW25_00875 (rnr)
Messenger RNA biogenesis [BR:
pui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PUW25_00875 (rnr)
Transfer RNA biogenesis [BR:
pui03016
]
Prokaryotic type
tRNA degradation factors
PUW25_00875 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1_RRP5
OB_HELZ2
CSD
OB_RNR_1st
S1CSD-TOTE-2
TBPIP
Motif
Other DBs
NCBI-ProteinID:
WDI02599
LinkDB
All DBs
Position
174461..177079
Genome browser
AA seq
872 aa
AA seq
DB search
MITEQQLLDFMLETAYKPMTYQELEQHFGIEDAAEFKAFLKLLNQLEDEGRIVLTRTNRY
GVPGRMQMVKGRLQAHAKGFAFLIPEDREHPDVYIHANDLKSAMNGDTVLVRVTSKGPEG
GRLEGEVIRIVKRAVVQVVGVFQSQEVYGFVIPDDKRINRDIFIPRTGFNNAVDGQKVVV
NIVSYPEGRAAAEGEIIEILGHKDDPGIDILSVIRKHQLPEAFPEEVIEEAEQAPDSITE
DEIIKQGRRDLRGLNIVTIDGEDAKDLDDAVNVERLPNGNYRLGVHIADVGYYVRENSKL
DQEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCVMEFNEQMKVVNHEVFT
SVIKTKERMTYKNVYKILEEEDPELIERYSELVDDFKLMKEIAMKLRDMRMRRGAVDFDF
EESKILVDEEGKPVDIVKRERTVAEQIIEEFMLAANETVAEHFHWLKVPFIYRVHEDPDQ
EKLQNFLGFAANFGFHVKGRGNSIHPRALQSLLEDIQGTKEQTVISTMMLRSMKQAKYDS
EMSGHFGLAAEFYSHFTSPIRRYPDLVIHRVMREVFENGGALPENRQEYLASRMPDIAQQ
SSERERVAVEAERDTEKMKKAQYMLDKVGEEFDGMISSVTSFGMFIELENTVEGLIRLSM
LTDDYYHFDDQHMILIGERTSKIFRIGDEVKIRVARVNMDEYTIDFEMVDMKPRQERGPG
AGFGGGSRREGRDGRGGRDSRGGNQGGRDSRGKGGSGGNRGKNGGRAGQQGASGTESRGG
QSFGFGSGKGGYNSPGGSSTGFAEGGRGGHSGQGKGRKKKTSKSGVFVGEQAAQAPSGNP
AKGGEGSGKRKRKPKGKSGGNGMAAFVRKKKK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgataactgaacaacaattacttgattttatgctggagacggcctataaaccgatgacg
tatcaagagctggagcagcatttcggcatcgaagatgcggctgagttcaaagcgttcttg
aagcttctgaatcagctcgaggacgagggaagaattgtcttgacccgtacgaaccgttac
ggtgtgccaggacgcatgcagatggtgaagggaagattgcaggctcacgcgaagggcttt
gcttttctcatacccgaggatcgtgagcatccggatgtctatattcatgcaaacgacctg
aagagtgcgatgaatggagataccgtgctggttcgtgtaacctccaaaggtccggaaggc
gggcggctggaaggtgaagtcatccgtatcgtcaagcgcgcggtagtacaggtcgttggc
gtgttccagagccaagaggtatatgggtttgttattccagatgacaagcgtattaatcgc
gatatttttatcccgaggacgggctttaataatgcggtggacggccagaaggttgtcgtc
aatatcgtaagctatccggaaggtcgtgctgctgcagaaggggaaatcatcgaaattctt
gggcataaagacgacccgggtatcgatattttgtccgtcattcgcaagcatcagctgcct
gaagcattcccggaggaagttatagaagaggcagaacaggcccctgactccattacggag
gatgaaattattaagcagggacgcagagatctgcgcgggctgaatattgtaaccattgac
ggtgaagatgcgaaggacttggatgatgcggtcaacgtagagcgcctgccgaatggcaat
tatcgtctaggcgttcatattgccgatgtcggttactatgtacgcgagaattccaagctg
gatcaggaagcgtataacaggggctgcagcgtgtacttggtagaccgggttattccgatg
ctgccgcatcgtttatccaatggaatatgcagcttgaatccccaagtggatcggctgacc
atgtcctgtgtgatggaattcaatgagcagatgaaggtcgtaaaccatgaggtcttcacc
agtgtgatcaagactaaagaacgtatgacctataagaatgtgtacaaaatcttggaggaa
gaagatcctgagctgatcgagcggtacagcgagctggtggacgacttcaagctgatgaag
gaaatcgcgatgaagctgcgtgacatgcgtatgcgccgtggcgcggtagactttgatttt
gaagagagcaagattcttgtggatgaggaaggtaagccggttgatatcgtcaagagagag
cgtacggtggcggagcagatcattgaggaattcatgctggcggctaacgaaaccgtagca
gagcatttccactggctgaaagtgccgttcatctaccgtgtccatgaggacccggatcag
gagaagctgcagaacttcctgggcttcgctgcaaactttgggtttcacgttaagggacgc
gggaattctattcatccaagagcgcttcagtccctgcttgaagatatccaaggcacgaag
gaacagaccgttatcagcacgatgatgcttcgttccatgaagcaggcgaaatacgattcc
gaaatgtccggacactttggtctggctgcggaattctacagccactttacgtcaccgatc
cgtcgttatccggatcttgtaattcaccgtgtcatgcgagaagtgttcgagaatggcggc
gcgcttcccgagaaccgacaggagtacctggcgagccggatgcctgacattgctcagcaa
tcttcagagcgggaacgtgtagccgttgaggccgaacgtgacaccgagaagatgaagaaa
gcacagtatatgctcgataaggtcggagaagagtttgacggcatgatcagcagtgtgacc
agcttcggaatgttcattgagcttgagaacacggtagagggtctcattcgtctcagtatg
ctgaccgatgattattatcattttgatgatcagcacatgattcttattggcgagcggacc
tcgaagatattccgtatcggggatgaagtgaagatccgtgtagcacgggtgaatatggat
gagtacaccattgattttgaaatggtagacatgaagccccggcaggagcgcggacctggt
gccggcttcggcggcggatcccgccgcgagggccgtgacggccgcggaggcagagacagc
cgaggcggtaatcagggcggacgggacagccgaggcaagggcggcagcggtggaaaccgc
ggcaagaatggcggcagagccggacagcagggagcttccggtacagaatcacgcggagga
cagagcttcggctttggctccggcaaaggcggctataactcaccaggcggatcctctacc
ggttttgcagaaggcggacgtggtggacattcaggccagggtaagggccgcaagaaaaaa
acgtcgaagagcggcgtattcgttggcgaacaagcagcacaggcgccaagcggcaacccg
gctaaaggtggagaaggctccggcaagcgcaagcgtaagcctaaagggaaaagcggcgga
aacggaatggccgcatttgtccgtaagaaaaagaaatag
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