Paenibacillus urinalis: PUW25_09085
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Entry
PUW25_09085 CDS
T08959
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pui
Paenibacillus urinalis
Pathway
pui03420
Nucleotide excision repair
pui03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PUW25_09085 (helD)
03430 Mismatch repair
PUW25_09085 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pui03400
]
PUW25_09085 (helD)
Enzymes [BR:
pui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PUW25_09085 (helD)
DNA repair and recombination proteins [BR:
pui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PUW25_09085 (helD)
MMR (mismatch excision repair)
Other MMR factors
PUW25_09085 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
AAA_30
PhoH
Viral_helicase1
SLFN-g3_helicase
DEAD
NACHT
nSTAND3
AAA_16
Catalase_C
Motif
Other DBs
NCBI-ProteinID:
WDI04083
LinkDB
All DBs
Position
1955645..1958008
Genome browser
AA seq
787 aa
AA seq
DB search
MSTDKEWQLEQARVDEVTEQIRQSINKLEGEVGSVRGEVVEMRKEFWDEVTINFSEADDV
GETSTNLRQQSEVLSERERSHKNAFNALKKLNKLEGNPYFGRIDFVEKGTDTAEPIYLGI
ASFLSEQENEFLVYDWRASISNLYYDGAPGPSSYRTPSGVIEGEITLKRQFTIRDGDIKF
MFDTGVTIGDELLQAVLSQSSDASMKSIVATIQREQNQIIRNDTSRLLIVQGAAGSGKTS
AALQRVAYLLYKDREFLKADQMILFSPNPMFNSYVSTVLPELGEENMLQTTFQEYLERRI
GKEYQLEDPFVQLEYVLSQPDDPGYEARIQGIQFKSSPEFLDLILSYKNRLAQTGMMFKP
LRFLGKEVISTQQITQKFYEFDKGIRIASRLELLKEWMLKELAAFGKGELTAAWVDEQIQ
LLGTEDYHRAYQRLRRKQRGKQDTFNDFDVERDILAKMVVSDRLKPLRKWVKATRFVDMK
GLYQAIFKEAGVSCGVDRSRLPAAWDDICKFTIDKINAQELAYEDTTPFLYLKDSLLGFR
VFTNIRHVIVDEAQDYSPFQLAFFKQMFPRAKMTALGDFNQAIYAHSSVLSGTSELRDIY
STDKAEVIRLTRSYRSTKEIVEFTKSLLPDGEAIVPFNREGEKPYVYEFGKRDEMEEAMV
LKLEELQSQGYESIAVICKSAGQSLKVYERLHGKLSTVPKLIKKTTLGFEKGVQVIPAYL
AKGVEFDAVIIYDGSAKAYSRESERKLFYTACTRAMHLLYIYSKGAVSPFVSKVDSQLYQ
HELEYSK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
ttgagtacggacaaggaatggcaactcgaacaggctagagtggacgaagttacagaacaa
attcgacaatcaattaacaagcttgagggtgaagtaggttctgttcgcggagaagtggtt
gagatgcgaaaagaattttgggatgaagtcaccattaactttagtgaagcagatgatgtc
ggtgagacttctacgaacttaagacagcaatccgaggtgctgtcagagcgggaacggagc
cacaaaaatgcatttaatgcactgaaaaagctcaataagctggaagggaatccctatttc
ggtcgtattgattttgtggagaagggaacggatacagcagagcctatatatttaggaatt
gcatcctttttatcagagcaggagaatgaatttcttgtctatgactggcgtgcttcgata
tcgaatctgtattacgacggggcaccggggccatcttcctatcgaacaccatcgggggtt
atcgaaggagagatcacgttaaaacggcagtttaccattcgtgatggagatatcaagttc
atgtttgatactggggttaccataggcgatgagttattgcaggctgtactcagtcaaagc
tctgatgcttcgatgaaaagtattgtggccaccattcagagagagcagaaccagattatt
cgaaatgatacaagccgtttgttaatcgttcaaggtgcagcgggcagcggaaaaacatcg
gcagcgctgcagcgtgtcgcctatctgctctataaagatcgggaatttctgaaggcggat
caaatgattctgttctctccgaatccgatgtttaacagctatgtatccaccgtattgcct
gagcttggcgaagagaatatgctgcagacgacatttcaggagtatttggaacgaagaatc
ggcaaagaataccagcttgaggatccctttgtgcagctggagtatgtcttatcccaacct
gacgatcctggttatgaagctcgaattcaaggcattcagttcaagtcctcacctgagttt
ctcgatttgattctaagctataagaatcggctggcacagacaggaatgatgttcaagccc
cttcgttttcttgggaaagaggtcatttcgacacagcagatcacgcagaaattttatgaa
tttgacaaggggattcgaattgcgagccggctagagcttctcaaagaatggatgctgaag
gagcttgctgcctttggtaaaggcgaacttaccgcggcgtgggtagacgaacagattcag
ctgcttggcacagaggactatcaccgggcctatcaaagattacggcggaagcagcgaggc
aagcaggatacatttaatgattttgacgtggaaagagatatattggccaaaatggtggtc
tccgatcgtcttaagccccttcgcaaatgggtcaaagcaacgcggtttgttgatatgaag
ggactgtaccaagccatatttaaggaagcaggggtgtcttgtggagttgaccgttcacgt
cttccggccgcatgggatgatatttgcaaatttacgattgataaaataaacgcccaggag
cttgcatatgaggatacgactccgttcttatatctaaaagattcattattaggatttcgt
gtgtttacgaatatacgccatgtcattgtggatgaagctcaggattattccccattccag
cttgccttcttcaaacaaatgttcccacgtgcgaagatgaccgcgctaggagattttaat
caggcgatctatgctcattcatccgtacttagtgggacaagtgagctgagagatatctat
agcacggacaaggcggaagtgataaggctcacgcgcagctatcgttcaacgaaggaaatc
gtagaatttacaaagtcattgcttcctgacggagaggccatcgttccattcaatcgtgag
ggagagaagccttacgtatatgaattcggaaagcgagatgagatggaggaagccatggta
ttgaagcttgaggagcttcagtcgcaaggatacgagtccatcgccgttatttgtaagtct
gcaggtcaaagccttaaggtatatgaacgtcttcacggcaagctcagcacagtgccaaaa
ctgattaagaaaacgacgcttggtttcgaaaaaggagtacaggtcattccggcatacctg
gcaaagggcgttgaatttgatgcagtcatcatttatgacggttcggccaaagcttattca
agagaaagtgaacgaaagctattctatacagcgtgcacgcgtgcgatgcacttactgtac
atttactccaaaggtgcagtcagtccgtttgtatcaaaggtagattctcagctgtatcag
catgaattggagtattcaaagtaa
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