Paenibacillus urinalis: PUW25_09500
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Entry
PUW25_09500 CDS
T08959
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pui
Paenibacillus urinalis
Brite
KEGG Orthology (KO) [BR:
pui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pui03032
]
PUW25_09500 (topA)
03400 DNA repair and recombination proteins [BR:
pui03400
]
PUW25_09500 (topA)
Enzymes [BR:
pui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PUW25_09500 (topA)
DNA replication proteins [BR:
pui03032
]
Prokaryotic type
DNA Topoisomerases
PUW25_09500 (topA)
DNA repair and recombination proteins [BR:
pui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PUW25_09500 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Toprim_3
Toprim_2
Ntox15
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-ProteinID:
WDI04161
LinkDB
All DBs
Position
2041445..2043544
Genome browser
AA seq
699 aa
AA seq
DB search
MADSLVIVESPSKAKTIGKYLGSKYIVKASMGHVRDLPKSQTGVEVENDFNPKYITIRGK
GSVLKELKDASKKVKKVYLAADPDREGEAIAWHLAHALELDQTESCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDRED
EINEFVPEEYWSITARLEADGSPFEAKFHQLRGEKTELSNEEQVKEILKEIKDKDYVVTE
VKEKERTRNPSAPFTTSSLQQEAARKLNFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRIAQSAQEEAKEYITGKYGESFVPESFRQYTKKNANAQEAHEAIRPTSVLRDPDSV
KAFTSRDQFRLYKLIWERYVASQMASAILDTLSVDIAAGDASFRATGSKVRFHGFMKVYV
EGNDDGTTDEEKLLPPLKSGDKLIHKEIEPKQHFTQPPPRYTEARLVKTMEELGIGRPST
YAPTLETIQKRGYVAIEEKKFIPTELGELINEQMEQFFPEIVDVEFTAHMEEDLDHVEEG
SEDWVKILAEFYKSFEKRLHVAEEEMSEIEIQDEVSDEICEKCGKPMVYKFGRFGKFLAC
SGFPDCRNTKPIIKNIGVTCPTCKEGQVVERRSKKGRIFYGCDRYPECDFVSWDKPSPKP
CPKCDSLMVEKRNKQGTRLQCTSCDHTEPVEEADEAVEI
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcacttgtcatcgtggagtccccatcgaaagcaaagacaattggtaaatat
ttgggcagcaagtatattgtcaaagcgtcgatgggtcatgtccgcgatttgccgaagagt
cagaccggcgtagaagtggagaacgattttaatcctaaatatattacaatccgcggaaaa
ggttctgtgctaaaagaacttaaggacgcatctaaaaaagtgaaaaaagtatatctggca
gctgaccccgatcgtgagggagaagccattgcttggcatttggctcatgctctggagctt
gaccaaaccgagagctgccgggtcgtatttaatgagataacgaagcaagcagtcaaggat
gccttcaagacgcctcgcaagatcaacatggatcttgtgaacgcacagcaggctagacgt
attttggaccggcttgtaggctacaagatcagtccacttttatggaaaaaggtgaagaag
ggtctatctgccggtcgagttcagtctgtagctgtcaaaattattctggatcgtgaggac
gaaattaacgaatttgttccggaagaatattggagcattacggcgagactagaagctgac
ggaagtccgtttgaggcaaaattccatcagcttcgcggagagaagacggagctcagtaat
gaagagcaagtgaaagaaatacttaaagaaattaaagataaggattatgtcgtaacagag
gtcaaagagaaagagcggacgcgcaatccttcggctccttttacaacaagttctttacag
caggaagcggctcgtaaattgaatttccgtgcagcgaagacgatgtctgtagctcagcag
ctatatgaaggagtcgagctcggcaaggaaggcacagttggtttgatcacttatatgaga
acggactctacgcgtattgcacagtctgctcaggaagaagccaaagaatatattacgggt
aagtacggcgaatccttcgttccggaatcattccgacaatatactaagaaaaatgcgaat
gcgcaggaagcgcatgaggcgattcggccaacctccgtattgagagatccggattcagtg
aaagcatttacaagtcgtgatcaattccgtctatacaagctgatatgggaacgatatgtg
gcgagtcagatggcctcagctattcttgataccctgtctgttgatatcgcagcaggagac
gcttcttttcgtgctacaggctccaaggtccgctttcatggcttcatgaaggtgtatgtc
gaaggtaacgatgatggtacaacggatgaagagaagctgctgcctccactgaagagcggg
gataagcttattcataaagaaattgagccgaagcagcactttacacagccgccgccacga
tatactgaagcaagactcgtcaagacaatggaagagctgggcatcggaagaccgagtacg
tatgctccaacgctggagacgattcagaaacgtggttatgtcgcaatagaagagaagaaa
tttattccgacagagcttggtgagcttattaacgagcagatggagcaatttttccctgaa
attgtcgatgttgagtttaccgcgcatatggaagaggatttggaccatgttgaagaagga
tctgaggactgggttaaaatattggctgagttctataaatcctttgagaagcgcctgcat
gtcgcagaagaagaaatgagtgagatcgaaatccaggatgaggtctccgatgagatctgt
gagaaatgcggtaaaccgatggtatataaatttggccgattcggtaagtttttggcatgc
tctggattcccggattgccgcaataccaagccgattattaaaaatatcggggtaacctgc
ccgacgtgtaaggaaggacaggtcgtcgagcgccgcagtaaaaaaggacggattttctac
ggctgtgaccgatatcctgaatgtgattttgtctcctgggataagccgtcacctaagcct
tgtcctaaatgtgattcattgatggtagagaagcgaaacaagcaaggaacaagactgcag
tgtacttcttgcgatcatacagaaccggtcgaggaagcggacgaagcggtcgaaatttaa
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