Paenibacillus urinalis: PUW25_13935
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Entry
PUW25_13935 CDS
T08959
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pui
Paenibacillus urinalis
Pathway
pui03420
Nucleotide excision repair
pui03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PUW25_13935 (helD)
03430 Mismatch repair
PUW25_13935 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pui03400
]
PUW25_13935 (helD)
Enzymes [BR:
pui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PUW25_13935 (helD)
DNA repair and recombination proteins [BR:
pui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PUW25_13935 (helD)
MMR (mismatch excision repair)
Other MMR factors
PUW25_13935 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
UvrD_C
AAA_19
Viral_helicase1
MC2
SLFN-g3_helicase
NACHT
DEAD
AAA_30
ResIII
nSTAND3
ROF
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WDI04882
LinkDB
All DBs
Position
complement(3008688..3011111)
Genome browser
AA seq
807 aa
AA seq
DB search
MNAKEWTQEQERLDQVVRELEARIIELEPEVTGLHDQVTGIRRRFWEEVTVNTNTHEDFE
ETFYSIRQQEVLLSERERSHKLRLQQLKNMKRLLGSPYFGRIDFVEKGMNFTEKVYIGVS
SFVDSEGMDFLVYDWRTPIASMYYDDEPGVAGYDTPSGHITGTMTLKRQYQIRQGKLHNV
FDTSLTIGDELLQQVLGQGADHQMKSIVATIQKEQNAIIRDDTSRMLIVQGAAGSGKTSA
ALQRVAYLLYKHRDRLTADQVVLFSPNPMFNSYVSTVLPELGEENMQQVTFQEYLEYSLS
DTFHLEDPFDQMEYILTAQPSNEEEYAARLSGIKYKASEAFLMAIQNYADGLMREGMQFS
SIRFRGHDLITAEQIKSKFYSYDASIRLANRIALLKEWLLSELRILEKKEREASWVRDEL
DYLDQDAYAQVYHELHNERAVFDFAEQYEEVRERLNNRRRADEGDFDFADREEELLRAMV
VKEQFSPVKQSVKRLSFIDMVKVYSSLFEEERVFMLKTNQADVPSLWAQICQQTKDKLCR
LELFYEDATPYLYLKELIEGVRTNTGVRHVFVDEGQDYSMFQYEYLKKMFPRARMTVLGD
FSQAIYTQATELYGVDSPLIRLYGEADTSLFHLIRSYRSTREIVTFTKAMLPEAKEVIPF
DRSGRKPDLYSVENGENRIIRMAEHLTSLREEGLTSIGIITKTAAESKEAYELLTARGCQ
DVKLITKRTLTFEAGVSIIPVYLAKGVEFDAVLIYDASADTYHQESERKLFYTACTRAMH
RLLIYSAGEWTPFIQSLDGDLYVTTQY
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcgaaggaatggacccaagaacaggaacggctagatcaggttgtacgtgagctg
gaagcgagaataattgaattggaaccggaggttacaggactacatgatcaggtaacaggt
attcgccgtcgtttctgggaagaagtgacggtcaataccaatacgcatgaggactttgaa
gaaacgttttacagcataaggcagcaggaggtgctattatctgaacgggaaagaagccac
aagcttcgtttgcagcagttaaagaatatgaagcgattgctgggctcgccttatttcggc
agaattgattttgtggaaaaagggatgaacttcacggaaaaggtctatatcggagtttct
tcctttgtagattcggaaggaatggatttcttagtttatgactggcgcaccccgatagca
agcatgtattacgatgatgagccgggagtggcaggctatgatacaccaagcggacatatc
acaggtacgatgacgctgaagagacagtaccagattcggcaaggcaagctgcacaatgtg
tttgacacgagtctgacgatcggagacgaattattgcaacaggtgcttggtcaaggtgct
gaccatcagatgaagagtattgtagctacaatacagaaggaacagaacgccattatccga
gacgataccagtcgaatgctgatcgttcagggtgcagcaggcagcggcaaaacttcagca
gcgcttcagcgtgttgcatatcttctctacaagcatcgggatagattaactgcggatcaa
gtcgttctattctcaccaaatccgatgttcaatagctacgtgtcgactgtactgcctgag
ctcggcgaagagaatatgcagcaggtgacctttcaggaatatcttgaatattcgcttagc
gacacatttcatctcgaggatccgtttgatcagatggaatatatattgacagcacaacca
tccaatgaagaagagtacgcagcaaggttaagcggtataaaatacaaagcttctgaggca
ttcctgatggctatacaaaactacgcagatgggcttatgcgggaggggatgcaatttagt
tccattcggtttcgtggacatgatctaatcacagcagagcaaataaaatctaaattctac
agctatgatgcttccattcgtctagccaatcggattgcactgctgaaggagtggttgtta
agtgaacttcgtattcttgagaaaaaagaacgggaagcttcttgggtacgagatgagctt
gattatcttgatcaggatgcatatgcccaagtatatcatgaattgcataacgagagggca
gtctttgactttgccgagcaatatgaagaggtcagagagagattaaataaccggcgcagg
gcggatgaaggggattttgacttcgccgatcgggaggaagagctgctaagagcaatggtt
gtgaaagaacaattctcacctgtaaaacaaagtgtaaagcggttgtctttcattgatatg
gtgaaggtatactcaagtttatttgaggaagaacgtgtgtttatgctgaagacgaatcaa
gccgatgtcccctcgttatgggcccaaatttgtcagcagacgaaggataagctctgccgg
ctagaactgttctacgaagatgccaccccctatttgtacttaaaagagctcattgaaggc
gttcggacaaataccggggtgcggcatgtgttcgtggacgaggggcaggattattcgatg
tttcaatatgagtacctcaaaaaaatgtttcctcgtgctcgaatgacagttctgggagat
ttcagccaggctatttacacgcaggcaacggagctctatggtgtggactccccgctcatt
cggctatatggcgaagcggacacaagtttatttcacctgatacgcagttatcgttcgacg
agagagattgttacatttaccaaagcaatgctgcccgaagccaaagaggttatccctttt
gatcgaagtggcaggaagcctgacctgtatagcgttgaaaatggagagaatcggatcatt
cgtatggccgagcacctcacttctcttagggaagaaggactcacctcaattggcatcatc
acaaagacggcagccgagagtaaagaggcatatgagctgcttacagcaagaggctgccaa
gatgtgaagctgatcacaaagcgtacgctcacttttgaagcaggtgtgtcgattatccct
gtctacttagcgaagggtgtggaatttgatgctgtcctaatctatgatgcgtctgcagat
acgtatcatcaggagagcgagcgtaagctcttctatacggcctgcacacgtgcgatgcat
cggctgttgatctattcagcaggagaatggacgccgtttatccaatcactggatggagat
ttgtatgtgacgacacagtattaa
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