Paenibacillus urinalis: PUW25_22260
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Entry
PUW25_22260 CDS
T08959
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pui
Paenibacillus urinalis
Pathway
pui03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pui00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PUW25_22260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pui03021
]
PUW25_22260 (rpoC)
03400 DNA repair and recombination proteins [BR:
pui03400
]
PUW25_22260 (rpoC)
Enzymes [BR:
pui01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PUW25_22260 (rpoC)
Transcription machinery [BR:
pui03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PUW25_22260 (rpoC)
DNA repair and recombination proteins [BR:
pui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PUW25_22260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WDI01900
UniProt:
A0ABY7XAK5
LinkDB
All DBs
Position
complement(4772204..4775818)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDVDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKD
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEKGSGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALNKTSFTDEQQNAMLITTVGKIIFNEIFPSSFPYINDATRANLFQGTPEHSFVYEKG
ADLREAIMNAPQAGGVGKDYLGHIIARCFEVYHTTQTSMILDRVKQLGFTYSTRAGVTVG
VSDVIVPDEKNEILRVSDEKVAVVTNQYRRGLITNEERYDRVIDIWSKAKDDITEVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFLS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFQTVRHPETGEIIAHRNELIDSDKAEAIVKAGVDKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVIKEIREAKDRREIEVQGEAETKVYAVTYGSRLRVSEGMEIEA
GDELTDGSIDPKEMLRIKGVRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGDTTLLPGSFVDTHEYETANKTAILSDKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSVKFANPEDGESQLEELEP
VSVD
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtaaacaatttcgaatatatgaaaatcgggcttgcatccccggaaaaaatt
cgctcttggtcccgcggagaagtgaaaaaaccggaaacgattaactatcgtacgctaaaa
ccggaaaaagaaggtctgttctgcgagaagatcttcggtcctacaaaggactgggaatgt
cactgtggtaaatacaagcgcgttcgttataaaggcgtcgtttgtgaccgttgcggcgtt
gaagtgactcgtgccaaagtgcgccgtgagcgcatggggcatattgaactggctgctccg
gtatcacatatctggtatttcaaaggcattccgagccgtatgggtttggctctggatatg
tctccaagatctcttgaagagatcatttactttgcatcttatgttgttaccgacccaggt
gaaactccactggagaaaaaacaactgctgtctgaaaaagaataccgcagctaccgtgag
aaatacggctacggtttccaagcaggtatgggtgcagaagcggttaaaaagctgcttcaa
gacctcgatgttgataaagagctggagttcttgaaagaagagcttcgtacagctcaaggt
caacgtcgcaaccgtgcgattaagcgccttgaagtgattgaagctttccgtaactccggc
aacaaaccggattggatgatcatggatgtccttcctgtcattccaccggagcttcgcccg
atggttcagcttgatggtggtcgttttgcgacttctgacttgaatgatctgtatcgtcgt
gtaattaaccgtaataaccgtctgaaacgccttcttgatcttggtgcaccagacatcatc
gttcagaatgagaagcgtatgcttcaagaagcagttgacgctctgatcgataacggccgt
cgtggccgtcctgttacaggtcctggtaaccgtccgctcaaatctctcagccacatgctg
aaaggtaaacaaggtcgcttccgtcagaacttgctcggtaaacgtgttgactattccggt
cgttccgttatcgtcgtaggtccttaccttaagatgtaccaatgcggcttgcctaaggat
atggcgcttgagttgttcaagcctttcgttatgaaagagcttgtgaacaaaggtctcgcg
cataatattaagagtgcaaaacgtaaagttgaacgtgtgagtcctgaagtatgggacgtt
cttgaagaagtaattaaggaacatccagtacttcttaaccgtgcccctacgcttcaccgt
ttgggtattcaagcatttgaaccgattctggtggaaggtaaagcgatccgtttgcatccg
ctcgtatgtacggcttacaacgccgactttgacggtgaccaaatggccgttcacgtacct
ttgtccgctgaagctcaagccgaagctcgtcttcttatgcttgcgtcaggtaatatcttg
aaccctaaagatggtaagccggttgttactccatctcaggatatggttcttggatccttc
tatctgacaatggataacaaagaagaaaaaggctcaggtatgatccttcgtacagtgaat
gaagctgtatctgcttaccaacgcggaactgcgggtcttcatgcacgtgttgcaataccg
gtcaaagctcttaacaaaacaagctttacggatgagcagcaaaatgcgatgctgatcaca
acggtcggtaagattatcttcaacgaaatcttcccaagtagcttcccatacattaatgat
gcaactcgtgctaacctcttccaaggtacgccggagcattcctttgtgtatgaaaaaggc
gctgatcttagagaagcaatcatgaatgcacctcaagcgggtggagtcggcaaagactat
cttggtcatatcattgcacgctgcttcgaggtataccatacaacacaaacatctatgatc
ttggatagggtcaaacagcttggattcacgtattctactcgtgctggggttaccgttggt
gtatccgacgttattgttcctgatgagaagaatgagattctacgtgtgtcagatgagaag
gttgctgtcgttacgaatcagtaccgtcgtggcttgattacgaacgaagaacgttatgac
cgcgttattgatatctggtccaaagcaaaagatgatatcacggaagtccttatgaaatcg
atggatcgcttcaactccatcatgctcatggttgactctaaagcccgtggtaataaatct
cagattacacagctgggcggtatgcggggtctgatggccaacccatccggtcgtatcatc
gagctcccaatcaaatcgaacttccgtgaaggtctgacggtactcgagtacttcctgtcc
acgcacggtgcacgtaaaggtcttgccgatacagccctgcgtacagctgactcaggttac
ctgactcgtcgtctcgttgacgtagcgcaagatgtgattgttcgggaagatgattgcgga
acagataaaggcttcactgtaagccgtattcaagatggtaaagaggttatcgaggatcta
tatgatcgtatcgaaggccgctattgcttccaaacggttcgtcatcctgagacaggtgaa
attattgcacatcgtaatgagctcatcgactctgacaaagctgaggctattgttaaagca
ggagtagacaaactgcaaatacgttctgtacttagctgccgtgctcgtcatggtgtctgc
aagaagtgttatggacgtaacctggcaacaggtaaacacgttgagatcggagaagcggtt
ggtatcatcgctgcacaatccatcggtgagccaggaacacagcttacaatgcgtacgttc
cataccggtggtgttgcaggagacgatattactcaaggtcttccgcgtatccaggagctt
ttcgaagcgcgtaatccgaaaggtcaagcaaccatcagtgaaattgatggtgttatcaaa
gagatccgcgaagctaaagatcgccgtgaaatcgaggttcaaggtgaagctgagacgaaa
gtctatgcagttacctatggctcccgtctgcgcgtaagcgagggaatggagattgaagcg
ggggatgagcttacggatggttcaattgacccgaaagaaatgctgcgcatcaaaggtgta
cgtggcgttcaaaactacatcctgcaagaagtacaacgcgtatatcgtaaccagggtgta
gaaatcaacgacaagcacgtagaagtaatgattcgtcaaatgctgcgcaagattcgtatt
gtggatgcaggagatactacgcttcttccaggttcgtttgttgatactcatgaatatgaa
acagcgaacaagacggcaattcttagtgacaaggagcctgcagtggctaagccagtcctt
ctgggtatcaccaaggcgtctcttgaaacagattccttcttgtcagcagcttccttccag
gaaacgactcgtgtcctgacggatgcagcaatcaaaggtaaggtcgatcagcttcttgga
ctgaaggaaaatgtaattatcggtaaactgatccctgctggtacaggtatgaaccgttat
cgcagtgtgaagtttgctaatccggaagatggcgaatctcaactagaagagcttgaaccg
gtatctgtagactga
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integrated database retrieval system
