Paenibacillus urinalis: PUW25_23165
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Entry
PUW25_23165 CDS
T08959
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pui
Paenibacillus urinalis
Pathway
pui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUW25_23165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pui03019
]
PUW25_23165
03009 Ribosome biogenesis [BR:
pui03009
]
PUW25_23165
Enzymes [BR:
pui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PUW25_23165
Messenger RNA biogenesis [BR:
pui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PUW25_23165
Ribosome biogenesis [BR:
pui03009
]
Prokaryotic type
rRNA helicases
PUW25_23165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CMS1
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
WDI04993
LinkDB
All DBs
Position
complement(4994526..4996094)
Genome browser
AA seq
522 aa
AA seq
DB search
MLSFEQLGIKPEWSEVLRQQGIATPTPVQEKSIPLALAGSDVIAEAQTGTGKTFAFMLPI
LQRIHAEDRSPQALIIAPTRELALQITTEAKKLTEANEAIRVLAVYGGQDVEKQLHKLKG
GAQIIIGTPGRLIDHLGRGTLALDKVKILVLDEADQMLHMGFLNEVETLIKALPYKRQTM
LFSATMPTGIRRLGRTYMKEPIDVKVKSDSVIPIKQIRQLVVECTDRTKQEALIGAIEQY
RPYLGIIFCRTKRRASALNSALQDLGYASDELHGDLSQAKRETVMKAFRNAKLQLLVATD
VAARGLDVEGVTHVFNYDIPHDPESYIHRIGRTGRAGGKGLALTFAAPKDKPELARIEQG
TDQRLDRIGWQSGYAGEPGSLQKFSGGGSTIDTRKVRSDAKRDGGRSGGQGSARKSRDDG
GERPRKGTGGRSGERQDPSRGSRSDGGSGGRGGQKRADKDRPWRADSKPSSGRGSGSRDG
RGGPSSSGRSGKQTGGRPAGPSSNRGGSAAGRDSKGGGRRGR
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
attttgagttttgaacaattaggtattaagccggaatggagcgaggttctgcgtcaacag
ggaatcgccactccaacaccggtgcaggagaagtcgattccgcttgctcttgcgggctcg
gatgtgattgcagaggcacagacaggaacaggcaagacgtttgcatttatgctgcctatt
ctgcagcgtatccatgcggaggatcgctccccacaggcactcattattgcaccgacccga
gagcttgcgctgcagattacgactgaagcgaagaagctgacggaagcgaatgaggcaatc
cgagtgcttgccgtgtatggcggccaggacgtggagaagcagctgcacaagctgaagggc
ggagcccaaattattatcggtacgccaggacggctcattgatcatctgggcagaggaacg
ctcgcgctggacaaagtgaagattctcgttctggacgaggcagatcaaatgctccacatg
ggattcttgaacgaggtagagacgctcatcaaggcattgccttacaagcgtcagacaatg
ctcttctctgcaaccatgccgacaggcatccgccgactgggccgtacctacatgaaggag
ccgattgatgttaaagtcaaatccgactctgtgattcctattaagcagattcgtcagctg
gtcgtagaatgtacggatcgtacgaagcaggaggcgctcattggtgcgattgagcagtat
cgtccatacctgggcatcatcttctgccgcaccaaacgccgtgcgtctgcgctgaattca
gcgcttcaggacttggggtatgcgagcgatgagcttcatggcgatctgtcccaagcgaag
cgcgagacggtgatgaaggcgttccgaaatgccaagctgcaattgcttgttgcgacagat
gtagcagccagaggactggatgtggaaggggtaacccatgtgtttaactatgacattcca
catgatccggagagctacattcaccggatcggcagaacagggcgagcaggcggtaaggga
ctagcgcttacctttgccgcaccgaaggacaagccggagctggcacgtattgagcaggga
acagatcagcgtctggaccgcatcggctggcagagcggctatgccggcgagccgggctca
ctccagaagttcagtggtggaggaagcacaattgatacgcggaaggttcgttcggatgcg
aagcgtgacggcggccgctccggcgggcagggcagcgctcgcaaatcaagagatgatggc
ggagaacgccctcgcaagggcacaggcgggcgttcaggtgaacgtcaggacccttcgcgc
ggatcacgcagtgatggcggatccggcggtcgtggaggtcagaagcgagcggataaggat
cgcccatggcgtgcagacagcaagccgagctctggccgaggcagtggcagcagagatgga
cgaggcggtccatcctcatcgggacgttccggcaagcagaccggaggccgtccggcgggt
ccgagctctaaccgaggaggctctgctgcagggcgtgacagcaagggcggaggacgcaga
ggcaggtaa
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integrated database retrieval system
