Pullulanibacillus sp. KACC 23026: PU629_01280
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Entry
PU629_01280 CDS
T08861
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
puk
Pullulanibacillus sp. KACC 23026
Pathway
puk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
puk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PU629_01280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
puk03019
]
PU629_01280
03009 Ribosome biogenesis [BR:
puk03009
]
PU629_01280
Enzymes [BR:
puk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PU629_01280
Messenger RNA biogenesis [BR:
puk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PU629_01280
Ribosome biogenesis [BR:
puk03009
]
Prokaryotic type
rRNA helicases
PU629_01280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
DUF4423
SWI2_SNF2
UvrD-helicase
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WEG13019
LinkDB
All DBs
Position
268388..269800
Genome browser
AA seq
470 aa
AA seq
DB search
MTFDKLGVSQALIEKLKEQGIAQPTPIQEEAIPLLLSGRDVIGRAETGSGKTMAFVLPIL
QRIQPEQHQIQALIVTPTRELAIQITAEIKKLNPDPGAIQLLAAYGGQDVEKQLHKLEKG
VHIVVGTPGRLLDHVRRGTIKLGGLRMLVLDEADQMLHFGFLKEVESLIRLTPNSRQTML
FSATMPDQVRQLSKQFMRNAKDIRIKATDELKPDIKQIAIETTDRTKFDKLCKIIDQFRP
YLALVFCRTKRRASHLNESLLGKGYLSDELHGDLSQAKRERVMKRFRDAEIQILVATDVA
ARGLDVQGVTHVINYDLPADKDSYIHRIGRTGRAGESGLAITFVGPREHDEFRRLYKAVN
GQITWKDIDGGTRPAPTVNGHDAPMKSDRRERTPKRASGTQGRESRERTSRMGEGRSAST
SKGRRGSGRPGQERTPVNREERSGRPERNDNRRPSQKPASRSRNSRRSSR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgacaaattaggtgtttctcaagcacttattgaaaagttaaaagaacagggg
attgctcagcctaccccgattcaggaggaagctataccgcttttattaagcggaagagat
gttattggccgtgccgaaacaggttcgggaaaaacaatggcatttgttctgcctatttta
cagcggattcagcctgaacagcatcagattcaagcgctcatagtgacacccacccgagag
cttgcgattcaaattacagcagaaattaagaagttaaatcctgatccaggagccatacag
ttgcttgcggcatatggcgggcaagatgttgaaaaacagcttcataagctggaaaaaggc
gtacatattgtggtcgggacgccgggacgcttgcttgatcatgtgagaaggggcacgatc
aaattaggtggactgcgaatgctcgttctcgatgaggcggatcaaatgcttcattttgga
tttttaaaagaagtcgagtctctcatacgattgacgccaaacagtcggcaaacgatgctg
ttttcagcgacaatgcccgatcaagtgcgtcaattgtctaaacaatttatgcggaatgca
aaggacatccggataaaagcaacggatgaattaaaacctgatatcaagcaaatcgccatt
gagacgacagatcgtactaagtttgacaagctttgtaaaattattgatcaatttcgtcct
tatttggcgcttgtattttgtcgaactaagcgacgggcgagccatcttaacgagtcgtta
ctaggaaaaggctatttgtctgatgagcttcacggtgacctgtcacaggctaagcgcgaa
cgtgtcatgaagcgattccgcgatgcggagattcaaattcttgtagcaacggatgtggcc
gctaggggtctagatgtccaaggggtgacacatgttatcaattacgatcttccggcggac
aaagacagctacattcatcgcatcggccgaacagggcgcgcaggtgaatctggacttgcg
attacgtttgttggaccacgtgagcatgatgaatttcggcgactatataaagcagtcaat
ggtcaaatcacttggaaggatatagatggagggacgcgaccggctccgactgttaatggc
catgacgccccgatgaagtctgatcgtcgcgagcggacgccaaagcgagcttccggaaca
cagggaagggaatcgcgagaacgcaccagccgcatgggtgaagggcgttctgcctctacc
tctaagggaagaagaggaagcggaagacccggtcaagaacgtacccctgttaatcgcgag
gaacgttcggggcgacctgagcgcaacgataatcggcgcccttctcaaaagccggcatca
cgttcaagaaattcaaggcgatcttcaagataa
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