Pullulanibacillus sp. KACC 23026: PU629_04565
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Entry
PU629_04565 CDS
T08861
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
puk
Pullulanibacillus sp. KACC 23026
Pathway
puk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
puk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PU629_04565 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
puk03019
]
PU629_04565 (rnr)
03016 Transfer RNA biogenesis [BR:
puk03016
]
PU629_04565 (rnr)
Enzymes [BR:
puk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PU629_04565 (rnr)
Messenger RNA biogenesis [BR:
puk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PU629_04565 (rnr)
Transfer RNA biogenesis [BR:
puk03016
]
Prokaryotic type
tRNA degradation factors
PU629_04565 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
OB_HELZ2
CSD
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WEG14897
LinkDB
All DBs
Position
1042694..1044985
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AA seq
763 aa
AA seq
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MGEEAVKPLTLQELEELFSMQDAEDYKDLIKTMNEMEEKGLVVRTRSNRYGLPEKMNLIR
GRVQGHAKGFAFIIPDDPEAGKDVYVASGDLNGAMNGDTVLVRLLTESRGDRPEGVIVRI
VERGTTRVVGTFTSSEHYGFVIPDDKRVPNDIFISKENMNGAAEGHKVVVELTKYPEGRK
NAEGIVVQILGHKNDPGVDILSIIHKHGIPTEFPQEVVDQATHVPDTISEEDLVGRRDLR
DWTIVTIDGEDAKDLDDAVNVIKLDNGNYQLGVHIADVSHYIKEGSPIDEEAFERGNSVY
LVDRVIPMIPHRLSNGICSLNPQVDRLTISCLMEITPQGKVVEHEIFPSVIKTTERMTYT
NVRKILNREDDEVLERYKELIPFFDLMGELANILTEKRRERGAIDFDFTEAKILVDESGH
PTDVVIRERSVAERLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPDPGKLEKFFKFAVN
FGYVVKGSPDSIHPRTLQSLLEEVKGQPEEAVISTVMLRSMQQAKYHPDSVGHFGLAAEF
YTHFTSPIRRYPDLIVHRLIRTYLFEKKTDGKTQQHWDSLLTEIAKHTSDMERRAVDAER
ETDDLKKAEFMLDKVGEEFEGVISGVTNFGLFVELPNTIEGLVHVSFLTDDYYHYVEEHM
ALIGERTGNVFRIGDGITVRVQHVNLDERSIDFEVVGMKGTPRRARQDRPKVITGPKSGR
QGGRSGEGSRSNGKSRGGSSRRGKADSRPNPASPRAKKKKRRR
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagaggccgttaagccgctcactctccaagaacttgaagagctttttagtatg
caggatgctgaggactacaaagatcttattaaaacgatgaatgagatggaagaaaaaggc
ttggtagtccgcacgcgcagcaatcgttacgggttgccagaaaaaatgaatttaattcgc
ggacgggttcaaggtcacgcgaaaggctttgcgtttattatccctgatgacccagaagcg
gggaaagatgtgtacgtagcttcaggcgacttaaatggggcgatgaatggtgacacggta
ctcgtgcgcctattaactgaatcacgcggtgaccggcctgagggcgtcattgtgcggatt
gtcgaacgcggaacgacgcgcgttgttgggacgtttacttcaagcgagcattacgggttc
gtgatccctgatgataaacgtgtgccaaacgacatttttatttccaaagaaaatatgaat
ggggcagctgaggggcataaagtggttgttgagttaaccaaatatcctgaaggccgaaaa
aatgcagaagggattgttgtgcagatcttgggtcataaaaatgatccgggtgtcgatatt
ttatcgattattcataagcatggcatcccaactgagtttcctcaagaagttgttgatcag
gcgacccatgttccggataccatttctgaagaagatctagtgggtagacgggatttgcgt
gactggacgattgtgacgattgacggtgaagacgcgaaggatttggatgacgcggttaat
gttatcaaattggataacggaaactatcaattgggcgtgcatattgcagatgtcagtcac
tatattaaagagggctcaccgattgatgaagaagcctttgagagaggcaatagtgtctat
ctcgtggaccgtgtcattccaatgattcctcaccgtttgtcaaacgggatttgctcatta
aatccacaggtggatcgtctcacgatttcctgtctgatggaaatcacaccacaaggcaaa
gtagttgagcacgaaatttttccgagtgtgattaagacaaccgagcgaatgacgtataca
aatgtgcgtaaaattcttaatcgcgaggacgatgaggttcttgaacgctataaagagttg
atcccattttttgatctaatgggtgaacttgctaatatcttaacagagaagcgccgtgaa
cgcggggccattgattttgactttactgaagctaaaatcctcgtggatgagtcgggccat
ccgactgatgtggttatccgggaacgcagtgtggccgaacgattgattgaagaatttatg
ctggctgcgaatgaaacggttgctgaacattttcattggatggacgtcccgtttatttac
cggattcacgaagacccagaccctggaaaactcgagaagttttttaagttcgctgtgaac
tttggttatgtggttaagggaagccctgattccatacacccaaggactttgcaatcttta
ttagaagaagtaaaaggccaaccggaggaagcggttatcagcacggttatgctgcgatca
atgcagcaggcgaagtatcatccggacagtgtgggacactttggacttgctgccgaattt
tatacccatttcacgtctccaattcgccgttatccggacttaattgtccatcggcttatt
cgcacctatctattcgaaaagaaaactgatggaaagacccagcagcattgggacagcttg
ctcacggagatcgcgaagcatacatccgatatggagcgccgggctgtcgatgcagaacgt
gagaccgatgatctgaagaaagccgaatttatgcttgataaggtcggtgaggaattcgaa
ggggtgatcagcggcgtcacgaacttcggtttgtttgtcgaacttcctaatacgattgaa
ggtcttgtccatgtcagtttcttaacggacgactattatcattacgttgaagagcatatg
gcattaatcggtgaacgaacaggcaatgtgttccgaatcggtgacggaattacagttcgc
gtccagcacgttaatctggatgaacgatccattgattttgaagtagtgggcatgaaagga
actcctcgacgagcgcgtcaggatcgtccgaaagtaattacagggcctaagtcagggcga
caagggggccgatcgggcgagggatctcgttcaaacggaaagagccgcggtggttcttca
cgtcgaggaaaggcggatagccgtcctaatccggcaagccctcgtgcaaaaaagaaaaag
cggagacgttaa
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