Pullulanibacillus sp. KACC 23026: PU629_21800
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Entry
PU629_21800 CDS
T08861
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
puk
Pullulanibacillus sp. KACC 23026
Pathway
puk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
puk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PU629_21800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
puk03021
]
PU629_21800 (rpoC)
03400 DNA repair and recombination proteins [BR:
puk03400
]
PU629_21800 (rpoC)
Enzymes [BR:
puk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PU629_21800 (rpoC)
Transcription machinery [BR:
puk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PU629_21800 (rpoC)
DNA repair and recombination proteins [BR:
puk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PU629_21800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
NQRA_N
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WEG12680
LinkDB
All DBs
Position
complement(4674644..4678264)
Genome browser
AA seq
1206 aa
AA seq
DB search
MLDVNKFEFMKIGLASPNKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVTEAGDTSLEKKQLLSEKEYRAYREKFGNSFKAGMGAESIKKLLQ
DIDLNKEADILKEELKTAQGQRRTRAIKRLEVLEAFRNSENDPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLQMYQCGLPKE
MALELFKPFVMKELVSKGIAHNIKSAKRKVEKVHPDVWGVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTIERKGAIGEGKIFRNADEALIAYQNGYVHLHSRIAVP
AATLNNLSFTEEQNKQYLITTVGKLIFNRILPESFPYINEPTHYNLEVATPEKYFVSPGT
DIPAEIQKREEVSPFKKKILGDIIAEVFKRFKITETSKMLDRMKALGFAHSTKAGITIGV
ADIVVLKEKQEILAEAEEKVNKVLKQFRRGLITEEERYERVISIWSGAKDTIQDKLMGSL
DKFNPIFMMQDSGARGNASNFTQLAGMRGLMANPSGRIIELPIRSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSAIKEGNEEIESLF
DRLVGRTAHETICHPETGEVFVEIGNVITEDQAKAITDAGVTEVIIRSVFMCETPHGVCK
KCYGRNLATGSEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQATISEISGTVTNITDQKDKREVTVQGAIETLSYSVLLNSRLKVKEGDEVHAG
QVLTEGSIDPKELLRVAGMEGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMMKKVRVV
ESGDTDVLPGALMDINNFKEANKQVLLNGGRPATARPILLGITKASLETESFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPRYRKVEFQRVDEEGETTHASDDN
LVNQES
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgtaaataaatttgagtttatgaaaattggtcttgcctcacctaataagatt
cgctcttggtctaggggtgaagtcaaaaagccagaaacaatcaactatcgaacattaaag
ccagaaaaagatggtctcttttgtgaacgcatttttggaccaactaaagactgggaatgt
cattgcggtaagtataaacgtgttcgatataaaggggttgtctgtgatcgctgcggagtt
gaagtaacgcgtgcaaaagtccgccgtgagcggatgggtcacattgaactcgctgcacca
gtctctcatatctggtacttcaaaggtattccaagcagaatgggtcttcttttagacatg
tcgcctcgtgcattggaggaagttatttactttgcctcctacgtggtaacagaagcaggt
gatacttctttagaaaagaaacaacttctttctgaaaaagagtatcgtgcctaccgtgaa
aaatttggcaatagcttcaaagcgggtatgggtgccgaatccattaaaaaattgcttcaa
gacatagatttaaataaagaagcagacatcttaaaagaagaattgaagacggcgcaagga
caaagacgtacgcgtgctattaagcgcttggaagttcttgaagccttccgtaattcggaa
aatgatccttcttggatgattttagatgttctgccggttatcccgcctgagcttcgtcct
atggttcaattagatggcggtcggtttgctacaagtgatctaaatgatctatatcgccgt
gtaatcaaccggaacaatcgtcttaaacgcctgcttgatttaggcgcgcctagcattatt
gttcaaaatgaaaagcggatgctccaagaagctgtagatgcattgattgataatggtcgt
cgcgggcgtcctgttactggaccgggtaatcgacctttgaaatcactttctcacatgctt
aaaggtaaacaaggacgtttccgtcaaaacttgctaggaaaacgtgttgactactctggt
cgttcagttattgttgttggaccgaaccttcaaatgtatcaatgcggtcttccaaaggaa
atggcgcttgaacttttcaagccatttgttatgaaagagcttgtaagtaaagggattgct
cataatattaagagtgccaaacggaaagttgaaaaagttcacccagatgtttggggtgtc
ttagaagatgtaattaaggagcatccagtactccttaaccgtgcaccgactcttcaccgt
cttggaattcaggcgtttgaaccaactttggttgaaggacgcgccattcgtttgcatcca
ctcgtttgtacggcatataatgcggacttcgatggtgaccaaatggctgttcacgttcct
ctttcggcagaagctcaggcagaagcacgtttgctcatgcttgctgctcaaaacattttg
aacccgaaagacgggaaaccagttgttacgccttcacaagacatggtattaggaaactat
tacttgacgattgaaagaaaaggagcaattggtgaagggaaaatattcagaaatgctgat
gaagcccttattgcttaccaaaatgggtatgttcatttgcattctcgtattgctgttcct
gcagcaacgcttaataatctttctttcactgaagaacaaaataagcaatatttaattaca
accgtagggaagcttatttttaaccgcattttgccggagtcattcccttatataaatgaa
ccaactcactacaaccttgaagttgctactccagagaaatattttgtttctcctggtacg
gatattccggctgaaattcagaaacgtgaagaagtttcgccatttaagaagaagattttg
ggcgatattattgctgaggtcttcaaacgatttaagattacagaaacctcaaaaatgctt
gaccgtatgaaggcgttaggttttgctcactcaacaaaagccgggattacgattggggta
gccgatatcgttgttctaaaagaaaaacaagaaatccttgcagaagcggaagaaaaggtt
aacaaagtgctcaaacaattccgccgcggtctcatcaccgaggaagagcgttatgagcga
gtgatctctatctggagtggtgcgaaagatacgattcaagataaactaatgggatccttg
gataaattcaacccaatcttcatgatgcaggactcaggggcgcgtggtaacgcctcaaac
tttactcaattagccggtatgcggggtcttatggcgaatccgtcgggacgaattattgaa
cttccaattcgctccagtttccgtgaagggttaaccgtattggaatactttatttccact
cacggtgcgcgtaaaggtttggcggatacagctctgaaaacagctgactctggatatttg
acacgtcgtcttgtagatgttgcccaggacgtcattgttcgtgaagaagattgcggaacg
gaccgcggacttcttgttagtgcaattaaagaaggtaatgaagaaattgaaagtttattt
gaccgcttagttggccgtacagctcatgaaacgatttgtcatcctgaaacaggggaagtc
ttcgttgaaatcggcaatgtgattactgaagatcaagccaaagcgatcacggatgcggga
gtaacagaggtcattattcgctcagtcttcatgtgtgagacaccacacggagtatgtaaa
aaatgttatggccgtaacctcgcaactggttctgaagttgaagtgggtgaggcagttggt
attattgcagcacaatcgatcggtgaaccgggtactcagttaaccatgcgtacattccat
actggtggtgttgcaggggatgatatcacgcaaggtcttcctcgtatccaagagttgttt
gaagctagaaatccaaaaggtcaagccacgatttctgaaatcagtggtacggtaactaat
attactgatcaaaaggataagcgtgaagtcactgttcaaggagctatcgaaaccttgtct
tatagcgtcttgttgaattctcgtctcaaagttaaagaaggcgatgaagttcatgctggt
caagtgttgactgaaggctcaattgaccctaaagaattattaagggttgctggtatggaa
ggtgttcaagagtaccttctgcgcgaggttcaaaaagtttatcgcatgcagggtgttgaa
attggcgataagcacgttgaagtaatggttcgtcaaatgatgaaaaaggttcgcgtggtt
gaatctggtgacacagatgttttacctggcgctttgatggatattaacaactttaaagaa
gccaataaacaagttctcctaaatggaggaaggccagcaaccgctcgtccaatcttgctt
ggtattacaaaggcatctcttgagacggaatcgttcttatcagctgcgtcattccaggaa
acaacacgtgtgttgaccgatgcagcgatcaaaggaaaacgtgatgaattactaggtctt
aaagaaaatgttattattggtaaacttgttccggctggtacaggtatgccgcgctatcgc
aaggttgaattccaaagagtagatgaagagggagaaacaactcacgcttctgatgacaat
ttggttaaccaagaaagctaa
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