Pasteurella multocida subsp. multocida 3480: NT08PM_1453
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Entry
NT08PM_1453 CDS
T02057
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pul
Pasteurella multocida subsp. multocida 3480
Pathway
pul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT08PM_1453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pul03019
]
NT08PM_1453
03016 Transfer RNA biogenesis [BR:
pul03016
]
NT08PM_1453
Enzymes [BR:
pul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NT08PM_1453
Messenger RNA biogenesis [BR:
pul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NT08PM_1453
Transfer RNA biogenesis [BR:
pul03016
]
Prokaryotic type
tRNA degradation factors
NT08PM_1453
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
AFI46571
LinkDB
All DBs
Position
1514865..1517267
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AA seq
800 aa
AA seq
DB search
MAKIKNNPHLQDPNYQEELAKYENPIPSREFILDTIRQHNAPISKEELLTTFAIQNEEQQ
EAMRRRLRAMENDGQLVFTKRKRYALPEKLDLLKGTVLGHRDGYGFLQVEGKDSDWFIPN
SQMQRVMHGDYVLAQPSGFDRRGRQEVRIVRVLQQRKKQIVGRFFLEDGIGYVVPDDSRI
NRDILIPNEHRQGARMGQVVVVELKPRTATFSQPVGMISEILGENMAKGMEVEIAIRNHD
IPHVFPDAVLKQVSKLSEEVPEEAKSGRIDLRHLPLVTIDGEDARDFDDAVFCQKKRGGG
WKLWVAIADVSYYVRLRTALDTEAHARGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLC
MVCELNVSAKGKITGYEFYEAVMNSHARLTYTKVARILEDDEELCTRYQTLVPHLKELHV
MYQALVEARHQRGAIDFETIESKFVFNEMGRIERIEPVIRNDAHKIIEECMILANIAAAN
FMEKHQEPALFRIHAGPSEEKVTGFRQFLSECGLSLEGGSKPSTADYAKLLEQIRERPDH
ELLQTMLLRSLSQAVYHPDNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKLKGS
KRRTTDTGGYHYTLDDMDVLGDHCSMTERRADDATRDVADWLKCEYMQDHVGEEFTGVIS
SVTGFGLFVRLDDLFIDGLVHISTLDNDYYQFDLARQRLIGENSGMIYRIGDKVKIRVEA
VSLEQRQVDFSLVSSERKPLREGKTAKDKLKKNARYAESLEKQRHKRKPSTSKSAVRKTS
VVKPSTTTKKASKKSAKKRK
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaatcaaaaacaatccacatttgcaagatccgaactatcaagaggaactcgca
aaatatgagaacccgatcccaagtcgtgaatttattcttgatacaattcgtcaacataat
gcacctatctcaaaagaagaattactgaccacatttgctattcaaaatgaagaacaacaa
gaagccatgcgccgtcgcttaagagcgatggaaaatgacggacaattggttttcactaaa
cgtaaacgctacgctttaccggaaaaactggatttattaaaagggaccgtattaggtcat
cgtgatggttatggttttttacaagtcgaaggtaaagacagcgattggtttatacccaac
agccaaatgcagcgagtaatgcacggtgactatgtcctcgcccaacctagcggttttgac
cgccgtggtcgccaagaagtgcggattgtccgcgtcttacaacagcgtaaaaaacaaatt
gttggtcgttttttcttagaagatggtattggttatgtagtacctgacgatagtcgaatt
aatcgcgacattttaattccgaatgaacaccgccaaggcgctcgtatgggacaagtggtt
gtagttgaattaaaaccacgtaccgcaacatttagccaacctgttggaatgattagcgaa
attctcggtgaaaatatggcaaaagggatggaggtggaaattgctatccgtaatcatgat
attccccatgtttttccagacgcggtcctcaaacaagtttctaaactgagtgaagaagta
cctgaagaagccaaatcaggacgtattgatttacgtcatcttccgttagttaccattgat
ggtgaagatgctcgcgattttgacgacgcggttttttgccagaaaaaacgtggaggcggt
tggaaactgtgggtcgccattgccgatgtcagctactatgttcgtttacgtactgccctt
gataccgaagcacatgcgcgtggaaactcggtatatttcccaaatcgcgttgttcctatg
ctaccggaaatcctctccaatggactttgttcattaaacccacaagtcgatcgcttatgt
atggtctgtgagctgaatgtttcagcaaaaggtaaaatcacaggttatgaattttatgaa
gcggtcatgaactctcatgctcgcttaacctataccaaagttgctcgtattttagaggac
gatgaagaactttgtactcgttatcaaacactggttccccatttaaaagaactccatgta
atgtaccaagccttagtggaagcccgtcatcaacgtggcgccattgactttgaaaccatt
gaaagtaagtttgtgtttaatgaaatggggcgaatcgaacggattgagcctgttattcgt
aatgatgcgcataaaatcattgaagaatgtatgatcctcgccaatattgcggcggcaaac
tttatggaaaaacatcaagagccagcccttttccgtattcatgcgggtccaagcgaagaa
aaagtgacgggcttccgccaattcctcagtgaatgtggtttaagccttgaaggtggcagt
aaaccaagtaccgcagactacgctaaattattggagcaaattcgcgaacgtccagatcat
gagttattgcaaaccatgttattacgttcgttaagtcaagccgtttatcatcctgacaat
attgggcactttgggcttgcactcgaagaatatgcgcattttacttcgccaattcgccgt
tatcctgatttgactttgcatcgtgggattaaatacttgttagccaaactaaaaggctcg
aaacggagaaccactgatacgggggggtatcactatacacttgatgacatggatgtatta
ggcgaccactgctccatgacagaacgacgggccgatgatgccactcgtgatgttgcagac
tggctaaaatgcgaatatatgcaagatcatgtaggcgaagaatttacaggtgtgatttca
tctgtgacaggttttggcttatttgtccgcttagatgacctctttattgatggcttagtc
cacatttctaccttagataacgactactaccaatttgatctcgctcgacaacgtttaatc
ggtgaaaatagtggtatgatctaccgcattggcgataaggtaaaaatccgtgtggaagcc
gttagccttgaacaacgccaagtggatttttctttagtgtcgagtgagcgtaaaccatta
cgagaaggcaaaacagccaaagacaagctcaagaaaaatgcacgctacgctgaaagtctc
gaaaaacaacgccataaacgtaaaccaagcaccagtaaaagtgcggtaagaaaaacaagc
gttgttaaaccatcaacaaccacgaaaaaagccagtaagaaatcagctaaaaagagaaag
tag
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