Pseudomonas umsongensis: HGP31_07475
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Entry
HGP31_07475 CDS
T06842
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pum
Pseudomonas umsongensis
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pum03016
]
HGP31_07475 (rnd)
Enzymes [BR:
pum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HGP31_07475 (rnd)
Transfer RNA biogenesis [BR:
pum03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HGP31_07475 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QJC78151
UniProt:
A0AAE6ZUZ5
LinkDB
All DBs
Position
1652368..1653501
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGRFCTEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGERAYLIDPL
TIDNWQPLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVKLRPQLSDDKYAWV
LEDGAELVANLRREIDPFEVYRDAKLAWKLSRAQLAVLRELCAWREQEARARDLPRNRII
REHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDLIKRSASVSPEQWPPAVPEPL
PVDAAALLKRLKAIGQAEAERLNIAPELMLRKKTLEALLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDSLATPGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcggttttgcaccgag
tggcagcagctgccgttcgttgccctcgacaccgaattcatgcgggtcgacaccttctac
ccgatcgcaggcctgctgcaggtcggcgatggcgaacgtgcctacctgatcgatccgttg
accatcgataactggcagcccctggccgccttgctggaaaatccagcggtggtcaaggtt
gtccatgcgtgtagcgaagacctcgaagtcctgctgcgcctgaccggcagcctgccggca
ccgctgttcgatacgcagctggccgccgcttacctgaacctgggtttttccatgggttat
tcgcggctggtacaggaagtattggggatcgacctgcccaagggcgaaacccgttccgac
tggctgcaacgcccgctttccgagacccagatcagctacgccgccgaagatgccgtgcac
ctggcggaagttttcgtgaaattgcgcccgcaactctccgatgacaaatacgcctgggtc
ctggaggacggtgcggagctggtggctaacctgcgtcgcgaaatcgatccgttcgaggtc
tatcgcgacgccaagctggcctggaagttgtcccgcgcgcagctcgctgtgttgcgtgag
ctctgcgcctggcgcgagcaggaggcgcgtgcccgtgacctgccgcgcaaccgcatcatc
cgcgagcattcgctgtggccgctggcgcgcacgcaaccggacaacctcggcgcattggcg
aaaatcgaagacatgcacccgcgtaccgtgcgtcaggacggcgaatttttgcttgatctg
ataaagcgctctgccagtgtgtcgcccgagcaatggccacccgccgtgcctgagccgttg
ccggtggacgccgccgcgctgctcaagcgactcaaagccatcggccaggccgaagccgaa
cgcttgaacatcgcgcctgagctgatgttgcgcaagaaaaccctggaagccttgctcaag
agtggcttccccaatggtccctatcaattgcctgattcgctgcgtggctggcgccgcgag
ttgatgggccaggcgctgctcgacagcctggccacccccggagaacagccttga
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