Pseudomonas umsongensis: HGP31_09460
Help
Entry
HGP31_09460 CDS
T06842
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pum
Pseudomonas umsongensis
Pathway
pum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HGP31_09460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pum03400
]
HGP31_09460 (mfd)
Enzymes [BR:
pum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HGP31_09460 (mfd)
DNA repair and recombination proteins [BR:
pum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HGP31_09460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QJC78526
UniProt:
A0AAE6ZVS1
LinkDB
All DBs
Position
complement(2091859..2095308)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELGF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRISALYRLPELSHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEATGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLEKEAVTRFKARFRERFDVDFR
RCPIFQDLNSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVESGAGRERFPARELPNL
AIEAKATQPLAALSGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLLLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQTTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLMRITALKLQAELLGIKKV
DGGPQGGRIEFATQTPVDPLTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggccgccagcgctgccaagcgcttt
accctgctgctcacagccgacagccaaagtgccgaacgactggaacaggagctgggtttc
ttcgccccggatttgcccgtgctgcatttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatttcggcgctttatcgattgccggaa
ctgagtcatggcgtgctggtggtgccgatcaccactgcgctgcaccgcctggcgccgacc
aaatttttgctcggcagcagcctggtcctggacgtcggccagaagctagacgtcgagcaa
atgcgcacccgcctcgaggccacaggctatcgctacgtcgataccgtgtacgaacatggc
gaattcaccgtgcgcggctccttgatcgacctgttcccgatgggcagcaagctgccttac
cggatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggaaaaccag
cgctccatcgacaaggtcgattcggtcaagctgctgccggccaaggaattcccgctggag
aaagaagccgtcacccgcttcaaggcacggtttcgcgagcgcttcgatgtcgacttccgg
cgctgcccgatcttccaggacctgaacagcgggattacccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaacctcgacgctgttcgattacctgcctcaggacacgcaa
gtgttctcgttgccaggcatcgagcaggccgcggaaaatttctggaacgacgtgcgcaat
cgttatgaagagcggcgcgtcgatccttcgcgtcctttattaccgcctgccgagttgttc
ctgccagtagaagactgcttcgcccgcctgaaaaactggccgcgagtggtcgccagccaa
caggatgtggagtccggcgctggccgcgagcgcttccccgcaagggaattgccgaacctg
gccatcgaagccaaggccacccagccgctggcggcgctctcgggtttcctcgacgagttc
cctgggcgcgtgctgttcactgccgaatccgcgggccgtcgcgaagtgctgctcgaactg
ctggaacgcctgaagctgcgaccgaagaccgtcgacagctggccggactttgtcgccagc
aaggagcgcctggcgatcaccatcgcgccgctggacgaaggcctgctgctggatgatccg
gccctggcgctggtcgccgaaagcccgttgttcggccagcgcgtgatgcagcgccgacgc
cgtgagaagcgcgccgacgccaacaacgacgcggtcatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgatcacggtgtcggccgctacctggggctgacgatc
ctggaaatcgacaaccaggccgccgaattcctcacccttgaatacgcggaaaacgccaag
ctttacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctcgccccgttgcatcgcctgggctccgagacctggcaaaaagccaagcgcaaggccgct
gaacaggtgcgcgacgtcgcggctgaattgctcgatatctacgcacgccgcgccgcgcgt
gaagggtatgccttcgccgacccgaaagccgattacgccaccttcagcgccggcttcccg
ttcgaagaaacgccagaccagcaaaccaccatcgaagcggtgcgcgaagacatgctcgcg
cccaagccgatggatcgcctggtgtgtggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgcagcgttcattgcggtgcacggcggtcgccaggtggcgatcctggtaccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
agcgtggaagtgatgagccgcttcaagtcggccaaagaggtgaacgcggcgatcgccgac
ctggccgaaggcaagatcgacattgtcatcggcacgcacaagctgctgtccgacgatgtg
aaaatcaaaaacctgggcctggtgatcatcgacgaagaacaccgcttcggtgtccgccag
aaagaacagctcaaggcgctgcgcagcgaagtcgacatcctcaccctgaccgcaacgccg
attccgcgcacgctgaacatggccgtgtcgggcatgcgcgacctgtcgatcattgccacg
ccgccggcccgtcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtt
aaagaggccctgctacgtgagctgctgcgcggcggccaggtctattatctgcacaacgac
gtcaagaccatcgagaaatgcgccgccgacctcgccgaactggtaccggaagcgcggatc
ggcatcggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtaccg
agcgccaacaccatcatcatcgagcgcgctgacaagttcggcctggcgcagctgcaccag
ctgcgcggtcgggtcggtcgcagtcaccaccaggcctacgcctacctgctgacgccgccg
cgccagcagatcaccgcggacgcggaaaagcgcctggaagcgatcgccaacacccaggac
ctcggcgcgggctttgtgctcgccaccaacgacctggaaatccgcggcgccggcgaattg
cttggcgacggccagagcgggcagatccaggcggtcggtttcacgctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgaacagcccaacctcgatcaaccgctg
ggcggtggtccggaagtcaacctgcgcgtaccggcgttgattcccgaagactatctgccg
gacgtccatgcccgcctgattctctacaagcgcatcgcttcggccaccgacgaggacggc
ctcaaggacctgcaggtcgagatgatcgaccgtttcggcctgttgcccgagccgaccaag
aacctgatgcgcatcaccgcactgaaattgcaggccgaattgctgggcatcaagaaagtc
gacggcggcccgcagggtggtcgaatcgaattcgcgacacaaaccccggtcgaccccctg
accctgatcaagttgatccagagccagcccaagcgctacaaattcgaaggcgcgacgatg
tttaaattccaggtcccgatggagcgcccggaagaacgctttaatactgtagaggcgctg
tttgagcgtcttatcccgaaaactgcttga
DBGET
integrated database retrieval system
