Pseudomonas umsongensis: HGP31_14560
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Entry
HGP31_14560 CDS
T06842
Symbol
sbcD
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pum
Pseudomonas umsongensis
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pum03400
]
HGP31_14560 (sbcD)
DNA repair and recombination proteins [BR:
pum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HGP31_14560 (sbcD)
Archaeal homologous recombinant proteins
HGP31_14560 (sbcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
QJC79483
UniProt:
A0AAE7DEJ5
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All DBs
Position
complement(3193237..3194481)
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AA seq
414 aa
AA seq
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MRLFHTSDWHLGQNLHGQDRDFEHGCFLDWLLRQLKLDQPDVLLIAGDIFDTVNPPVKAQ
ERLYDFIVSAHEQQPLLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA
ERLLLPLPDARGEIAAWCLALPFLRPAEVTGAHLGDDYLRGIGQVHEWLIEAANARRQPG
QALIAISHAHMAGGSVSEDSERSLIIGNAEALSASLFGPTISYVALGHLHKPQKVNGEAR
IRYSGSPIPLSFSEIGYQHQILDITLDGETLVSVEPKLIPRAVNLQRIGPAPLADILVQL
ADLPIIDLLADYQRQPWLEVRVRLDEPQPDLRHQVESALQGKAVRLVRIAAEYAGNGSRE
GADNGAGLIELDQLTPQELFSRAWQDNYGSEVDEQTLKDFAELLQDVQMEDEQP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtctgttccacacctccgactggcacctcgggcagaatctgcacggccaggatcgc
gactttgagcacggctgttttctcgactggctgctgcgtcagctcaagctggatcagccg
gatgtgctgctgatcgccggcgatatcttcgacacggtcaacccgccggtcaaagcccag
gaacgtctttacgacttcatcgtcagcgcccatgagcagcaaccgttgctgaccatcgtg
atgatcgccggcaaccacgattccggttcgcggatcgaactgcccgcgcccttgatgcgc
cgtttgcgtactcacgccctggggcgtgtgctgtggctggatgacgggcaactggacgcc
gaacgcctgttgctgccactgcccgatgcccggggtgaaattgccgcctggtgcctggcg
ctaccgttcctgcgcccagccgaagtgacgggcgcgcatttgggcgatgactacctgcgc
ggcatcggccaggttcatgaatggctgatcgaagcggccaatgccaggcgccagcccggt
caagcgctgatcgccatcagccatgcgcacatggccggcggttcggtgtcggaggattcc
gagcgcagcctgatcatcggcaacgccgaagccctgtccgccagcctgttcgggccgacc
atcagctacgtcgccctggggcatttgcacaagccacagaaggtcaatggcgaggcgcgc
attcgctacagcggctcgccgatacccctgtcattctcggagatcggctaccagcaccag
attctcgacatcacactcgatggcgaaacgctggtcagcgtcgaaccgaaactgatcccc
cgtgccgtcaacctgcaacgtatcggccctgcgcccctggcagacatcctggtgcaactg
gccgacctgcccatcatcgacctgttggccgactaccagcgccaaccctggctggaagtg
cgagtgcgcctggacgagccgcaaccggatttgcgtcatcaagtggaaagcgccctgcag
ggcaaagccgtgcgcctggtacgcatcgccgccgaatacgcgggcaacggcagccgcgaa
ggcgccgataacggcgccgggttaattgagctggaccagctcacgccccaggaactgttc
agccgcgcctggcaggacaactacggcagcgaggtcgatgagcaaaccctcaaggacttt
gccgagctgctgcaagacgtgcagatggaggacgaacagccatga
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