Pseudomonas umsongensis: HGP31_16790
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Entry
HGP31_16790 CDS
T06842
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pum
Pseudomonas umsongensis
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pum03032
]
HGP31_16790
03400 DNA repair and recombination proteins [BR:
pum03400
]
HGP31_16790
Enzymes [BR:
pum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HGP31_16790
DNA replication proteins [BR:
pum03032
]
Prokaryotic type
DNA Topoisomerases
HGP31_16790
DNA repair and recombination proteins [BR:
pum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HGP31_16790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QJC79895
UniProt:
A0AAE6ZV16
LinkDB
All DBs
Position
3718609..3719628
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AA seq
339 aa
AA seq
DB search
MPDALPRDLHYVDDTQPGITRRKLRGKFCYFDPTGQRIVDPQEIQRINALAVPPAYTDVW
ICSDPRGHLQATGRDARGRKQYRYHPRWREVRDSDKYSRLRDFGLALPKLRKQLETLLEA
PGLSRDKVMATVITLLDATLIRVGNTQYARDNRSYGLTTLRNRHVEVNGSAIQFQFRGKS
GVEHQITVKDRRLARIIKRCQDIPGQNLFQYLDENGERHTITSADVNAYLQTLTGADFTA
KDYRTWAGSALALAVLRELEWQPESQAKQHVVAMVKDVARQLGNTPAVCRKCYIHPAVLE
GFLLGALAQLPKPRVRKGLRAEEVALAMLLEKMASEATN
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatgcactgccccgtgacctgcattacgtcgatgacacccagcccggcatcacc
cgccgcaaactgcgcggcaaattctgctatttcgaccccactggccagcgcatcgtcgac
ccgcaagaaatacagcgcatcaacgcactggcggtccccccagcctacaccgacgtgtgg
atctgcagcgacccgcgcgggcacctgcaggccaccggtcgcgacgcccgcgggcgcaag
cagtaccgctatcacccgcgctggcgcgaggtgcgcgacagcgacaaatactcgcggctg
agggatttcggcctggccctgcccaagctgcgcaaacaactggaaaccttgctggaggcg
ccgggtttgagtcgcgacaaggtcatggccaccgtcatcaccttgctcgacgcaacgctg
atccgtgtcggcaatacccagtacgcacgagacaaccgctcctacggcctgaccaccctg
cgcaaccgccatgtcgaggtcaacggcagtgcgatccagttccagtttcgcggcaagagt
ggcgtcgagcaccagatcaccgtgaaggaccggcgcctggcgcggatcatcaagcgttgc
caggacattcccgggcaaaacctttttcaatacctcgatgaaaacggcgagcgacacacg
atcacttccgccgacgtcaacgcctacctgcaaaccctgactggcgccgacttcaccgcc
aaggattaccgcacctgggccggcagcgccctggccctggcggttctgcgcgagctcgag
tggcaacccgagtcccaggcaaaacagcatgtggttgcgatggtcaaggatgtcgccaga
cagttgggcaacactccggcggtgtgccgcaagtgctacatccacccggcggtactcgag
ggtttcctgctcggcgccttggcgcaactgccaaaaccgagggttcgtaaaggcctgcgg
gcggaggaagtcgcactggcgatgctgctggagaaaatggcgtccgaggcgacgaactga
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