Pseudomonas umsongensis: HGP31_17670
Help
Entry
HGP31_17670 CDS
T06842
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pum
Pseudomonas umsongensis
Pathway
pum02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
HGP31_17670 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pum02044
]
HGP31_17670 (tssC)
Secretion system [BR:
pum02044
]
Type VI secretion system
Imp/Vas secretion system core components
HGP31_17670 (tssC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
Motif
Other DBs
NCBI-ProteinID:
QJC80054
UniProt:
A0AAE7DF09
LinkDB
All DBs
Position
complement(3941472..3943034)
Genome browser
AA seq
520 aa
AA seq
DB search
MSIESSNVQSRDATVLSEERGVYGALFGKINLSPVETLSSIEVFQNTEALSEVSADERVT
AAVSVFLKLLGQSSQKFERLDKVLLDEHIAALDAQISRQLDAVMHHPDFQRVESTWRGVK
SLVDQTDFRQNVRIELLDISKEHLVQDFDDAPEIAQSGLYMHTYTQEYDTPGGEPIAAAI
SNYEFDCRPQDIALLRNISKVAAAAHMPFIGTVGPAFFGKRSMEEVAAIKDIGNYFDRAE
YLKWKAFRDSDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVESVKGPDHDKYLWTSASF
AFAANMVKSFIANGWCVQIRGPQSGGAVTELPIHLYDLGTGNQVKIPSEVMIPETREFEF
ADLGFIPLSYYKNRDYACFFSANSTQKAALYDTADATANSRINSRLPYIFLLSRIAHYLK
LIQRENIGTTKDRRLLELELNKWIGGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPGF
FRVKLYAVPHFQVEGMDVNLSLVSQMPKRKADTVRGESRS
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcgaaagttctaacgtgcaatcgcgcgacgctacagtgttgtccgaagaaaga
ggcgtatatggcgcactgtttggcaagatcaatctcagtccggtcgaaaccctgagtagt
atcgaagtatttcaaaataccgaggcgctctccgaagtgtccgccgatgagcgagtaacg
gcggctgtcagtgtatttctgaaactgctggggcagtcttcgcagaaattcgaacgcctg
gataaagtcctgctcgatgaacacattgcagccctggatgcgcaaatcagccggcaactc
gatgccgtgatgcaccaccccgatttccagcgggtggagtcaacctggcgtggggtcaag
tcgctggtcgaccagaccgattttcgtcagaacgtgcgcattgaattgctcgatatcagt
aaggagcatctggtccaggatttcgacgatgcaccggaaattgcgcaaagcggcctgtac
atgcatacctacacccaggagtacgacactcccggcggggagcccattgccgccgcgatc
tccaactatgagttcgattgcaggccgcaggatatcgccctgctgcgcaacatttccaaa
gtcgcggccgccgcgcacatgcccttcattggcacggttggcccggccttcttcggcaag
cgctcgatggaagaagtggccgccatcaaggacatcggcaactattttgaccgtgccgaa
tacctgaaatggaaggcgttccgcgacagtgacgacgcccgctacatcggcctggtcatg
ccccgtgtcctggggcgcctgccttatgggccggacaccgttccggtgcgcagcttcaac
tacgtcgagagcgtcaagggcccggaccacgacaagtacctgtggaccagcgcctcgttc
gcctttgccgccaacatggtcaagagcttcattgccaatggctggtgcgtgcagatccgc
gggccgcagtcgggcggcgcagtcaccgaattgccgatccacctctatgacctgggcacc
ggcaaccaggtgaagattccttcggaagtcatgatcccggagactcgcgaattcgaattc
gccgacctcggtttcatcccgctgtcgtattacaagaaccgcgactacgcgtgcttcttc
tccgccaactcgacccagaaagccgccctgtatgacaccgccgatgcaaccgccaacagc
cgcatcaattcgcgcctgccgtacattttcctgctgtcgcgcattgcccattacctcaag
ctgatccagcgcgagaacatcggcaccaccaaggaccggcgcttgctggagctggagctg
aacaagtggattggcgggctggtcaccgagatgaccgacccgggcgacgacctgcaggcc
tcgcacccgctgcgtgacgccaaggtcaccgtggaagacatcgaggacaacccgggcttc
ttccgcgtcaagctgtacgccgtgccgcacttccaggtggagggcatggacgtcaacctt
tcgctggtatcgcagatgcccaagcgcaaggctgataccgttcgcggggaatccaggtct
tga
DBGET
integrated database retrieval system
