Pseudomonas umsongensis: HGP31_17775
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Entry
HGP31_17775 CDS
T06842
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pum
Pseudomonas umsongensis
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pum03016
]
HGP31_17775 (thpR)
Enzymes [BR:
pum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
HGP31_17775 (thpR)
Transfer RNA biogenesis [BR:
pum03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
HGP31_17775 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QJC80074
UniProt:
A0AAE6ZXI8
LinkDB
All DBs
Position
complement(3964450..3964995)
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AA seq
181 aa
AA seq
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MNDETHEPFKRLFFALGCAPAQRKAIAQWRSALQLRSGRAVPVENFHLTLKFLGAVAIAQ
IADICTAAASVRTSGERLTVELDRLDVWRRAGVLVLAPEQASPALLRLVYDLEQALLPFG
LEDAPREFRPHLTLARDYRAPVPESPTPPEFVLRADRFALFESHKGRYRALAEWPLGGGV
T
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgaaacccatgagccgttcaagcgcttgtttttcgcgctcggctgcgcgccg
gcgcaacgcaaggccatcgcccagtggcgcagcgccttgcaactgcgcagcggacgtgcg
gtgccggtcgagaactttcatctgaccttgaagtttctgggggcggtcgcgatcgcgcag
attgccgatatctgcacggctgccgcgtctgtacgaacgtcgggcgaacgcttgaccgtg
gagctcgatcgactcgacgtctggcgcagggcaggggtcttggtgttggcacccgagcag
gcatcgcccgcgttgttgcggctggtgtatgacctggagcaggccctgttgccctttggc
cttgaggatgcaccacgggaatttcgcccgcacttgaccttggctcgagactatcgggcg
ccggtgccggagtctcccacgccacccgagtttgtcctgcgtgctgatcgcttcgcgttg
ttcgaatcgcacaagggccgttaccgggcgctggccgaatggccgttgggggggggggtg
acttaa
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