Pseudomonas umsongensis: HGP31_21310
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Entry
HGP31_21310 CDS
T06842
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pum
Pseudomonas umsongensis
Pathway
pum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGP31_21310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pum03019
]
HGP31_21310
03009 Ribosome biogenesis [BR:
pum03009
]
HGP31_21310
Enzymes [BR:
pum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGP31_21310
Messenger RNA biogenesis [BR:
pum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGP31_21310
Ribosome biogenesis [BR:
pum03009
]
Prokaryotic type
rRNA helicases
HGP31_21310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QJC80736
UniProt:
A0AAE6ZZ02
LinkDB
All DBs
Position
complement(4729112..4730785)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVAEAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPERGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLSKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcaccctaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatt
ctcgccggtcacgatatgattggccaggcgcaaaccggtaccggtaaaaccgctgccttt
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctacaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtaactgttgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagttctggcgaccgtgaaccacctggttctcgacgaagcagacgaa
atgctcaagctgggcttcatggacgacctggaagtcatcttcaaggccatgccggaaacc
cgtcagaccgtactgttctcggccaccttgcctcaatcgattcgtgccatcgctgagcgc
cacctgcgcgatccgaagcacgtcaagatccagagcaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacttccgccgttctcagcttgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgctcgtggcctggacgttccgcgcatcactcacgtgttcaacgtc
gacatgccgtacgatccggaatcctacgttcaccgtatcggtcgtaccggccgtgccggt
cgcgaaggtcgtgcattgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaggttgctgaagttcgcctgccggacgctcaagccgttctg
gatgcgcgcatcaagaaactgaccaacagcctgtcgccgctggtggctgaagccgaatcg
acccacggtgatctgctcgatcgcctgaccgccgacatcggttgcagcccgcgtgccctg
gccgcagccctgctgcgcaaggcaaccaacggtcaagcgctgaacctggccgctatcgag
aaagagcgtccactggtgccgaacaacgcaccgcgtggcgatcgtccagagcgttccggt
gatcgtcctgagcgtggtgaccgcgagcgtcgcgcaccgatccctctggccgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggc
gcgatcctcaacgaaggtggtctggcgcgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgaactgccggaagacggtcttgagaagttgctgagcaagctgaag
gacactcgcgttgccggtaagcagttgaagctgcgtcgctaccgcgaagattga
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