Pseudomonas umsongensis: HGP31_23975
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Entry
HGP31_23975 CDS
T06842
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pum
Pseudomonas umsongensis
Pathway
pum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGP31_23975 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pum03019
]
HGP31_23975 (rne)
03009 Ribosome biogenesis [BR:
pum03009
]
HGP31_23975 (rne)
Enzymes [BR:
pum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HGP31_23975 (rne)
Messenger RNA biogenesis [BR:
pum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HGP31_23975 (rne)
Ribosome biogenesis [BR:
pum03009
]
Prokaryotic type
rRNA processing factors
HGP31_23975 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QJC81220
UniProt:
A0AAE6ZYL0
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All DBs
Position
5331985..5335230
Genome browser
AA seq
1081 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKTPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAAINQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVVAAPVPAPVAAPEPSLFKGLVKSLVSLFASKEEPVAPTVVEKPATTERPARSNEEQRR
TGRQQSRTRNGRRDEERKPREERAPREERAPREPREERQPREVREPRETREETPVVAREE
RAPREERAPRAPREERTPRAPREDRKPRGEREERVRELREPLDAVAPAAAAVAAATTEER
PARPPREERAPRPPREERQPRAEQAAAVAEEELTGNEEQLQEEGQEGAEGDRPRRRSRGQ
RRRSNRRERQRDANGNVIEGSDESEAGDNTEAPSTADLAAGLAVTAAVASSVISAPAEAQ
ANEQAERATAATLETAPAEAPVVEATTPVETTASPEIEVAAAPEAQPVVEAAAEPAVVAE
PVADTVTETVTEAVREVREEQTAFNWVAEPAVAETPAPEPVAEAEVAQALVSEPVVAAAE
PAPVVEAPVVAPTPAPVVEAAPISALTPSGRAPNDPREVRRRKREEERLQKEAELAAAAA
QVVAAEPAPVAAEVVEASAPVAEVAAEPVESVIAEAPRSVQEAVEQHEKAQEKEHEPKPL
V
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccagcgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagcctggaggctgcctttgtcgatttc
ggctctgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
acccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagagcgtggcaacaagggcgccgccctgaccacgttcatcagcctg
gccggtcgttacctcgtgctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
atcgaaggcgaagagcgcaatgaattgcgtgaagcgctgaacggcctggttgccccggcc
gacatgggcctgatcgtgcgcactgccggcctgggtcgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcttcgctggatcgttcc
gcgcctttcctgatctaccaggaaagcaacgtgatcatccgcgcgatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcattcgccaggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgtt
ccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgctttccagcgcgtcgtc
gaactgccttccggcggctccatcgtgatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggtagcgacatcgaagagaccgcgctgcagaccaac
cttgaagccgccgaagaaatcgcccgccagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgtgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgcccgcgtgcaagtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccatccctgggcgaaagcagcggcatcgtt
tgcccgcgctgcaacggcaccggcatcatccgtgacgttgaatcgctgtctttggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgtgcacaagtg
ccgatcccggtggccgcgttcctgctcaacgaaaagcgtaactcgatcaccaagatcgaa
ctgcgtacccgtgcccgcatcgtcatcctgccgaacgatcacctcgaaacgccgcacttc
gaagttcagcgcctgcgtgatgacagcccggaagcggcgatcaaccagtccagctacgaa
atcgccgctgccgctgccgaagtggaagaagtgcagccagctgccgcgacccgcaccctg
gtacgccaggaagccgcggtcaagacggctcccgcccgcgccaacgctccggtgccgacc
gaagtcgtcgccgcaccggttcccgcacctgtcgccgcgccagagccaagccttttcaaa
ggcctggtgaagtcgttggtcagcctgttcgcgtccaaggaagagcctgtcgctccgacc
gtggttgagaaaccggctaccaccgagcgtcccgcacgcagcaacgaggaacaacgtcgt
accggccgccagcagagccgcacccgtaacggtcgccgcgatgaagagcgcaagcctcgt
gaagagcgcgcgccccgcgaagaacgcgccccacgcgagccgcgcgaagagcgccagcca
cgcgaagtacgtgaaccacgcgaaacccgcgaagaaacgccagtcgtagcccgcgaagaa
cgtgcaccacgtgaagaacgcgctccgcgcgcgccacgtgaagagcgtactccgcgtgcc
ccgcgcgaagatcgcaagccacgtggcgagcgtgaggagcgtgtgcgtgaactgcgcgag
ccgctggacgctgtcgctcctgctgccgctgctgtcgctgccgcgaccactgaagaacgc
ccggcccgcccgccacgcgaagaacgcgctccacgcccaccgcgtgaagaacgtcaaccg
cgtgccgagcaagcggctgccgtagccgaagaagagctgaccggcaacgaagagcaactg
caggaagaaggtcaggaaggcgccgaaggcgatcgtccacgccgccgttcccgtggccag
cgtcgtcgcagcaaccgccgcgagcgtcagcgtgatgccaacggcaacgtgatcgaaggt
tcggatgagtccgaagccggcgataacactgaagcgccaagcactgctgacctggccgcc
ggcctagctgttaccgcagccgttgccagcagcgtgatcagcgctccggccgaagcacag
gccaacgagcaagccgaacgcgccaccgccgccacactggaaacggccccggccgaagcg
ccagtggtggaagcgacgactccggtcgaaaccacagcttcgccggaaatcgaagtggca
gcagcgccagaagcacagccagtggttgaagctgcagctgagccagccgtggttgcagaa
ccggttgccgacaccgtgactgaaaccgtgaccgaggccgttcgtgaagttcgcgaagag
caaaccgcgttcaactgggttgccgagccagccgtagccgaaacccctgctccagagccg
gttgctgaagccgaggtggcgcaagcgttggtctccgagccagtggttgccgctgccgag
ccagctccagtggttgaagcgccggttgttgccccaacgcctgctccagtggttgaagcc
gcgccaatcagcgccctgacgccaagtggccgcgcaccgaacgacccacgtgaagtgcgt
cgccgcaagcgtgaagaagagcgtctgcagaaggaagccgaactggcggccgctgctgcc
caggttgttgctgccgagccagctccggttgccgccgaagtggtcgaggcatctgccccg
gttgccgaagtcgctgccgagccggttgagtcagtgattgccgaagcacctcgctccgtt
caggaagcggttgagcaacacgagaaagcccaggaaaaagagcacgagcctaaacctctc
gtctga
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