Pseudomonas umsongensis: HGP31_24240
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Entry
HGP31_24240 CDS
T06842
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pum
Pseudomonas umsongensis
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pum03009
]
HGP31_24240 (rlmD)
Enzymes [BR:
pum01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HGP31_24240 (rlmD)
Ribosome biogenesis [BR:
pum03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HGP31_24240 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
TRAM
Methyltransf_31
MTS
Methyltransf_23
Methyltransf_11
PCMT
RrnaAD
Methyltr_RsmB-F
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_15
Hydrolase
DREV
Motif
Other DBs
NCBI-ProteinID:
QJC81267
UniProt:
A0AAE7DFU4
LinkDB
All DBs
Position
complement(5385393..5386745)
Genome browser
AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPTGGSKAPQVPTGKKQRLNIERLANDGRGIAFFEGRTWFVIGALAGEEV
EARVLGAHGKVVEARTERVFKSSELRRPAPCAHAGRCGGCSVQHLPHSEQLALKQRMLAE
QLSKVAGVEPEEWVAPLSGPEFAYRRRARVAVRWDMKAKKLEVGFRAAGSQDIVGIDDCP
VLVQPLQPIMAHLPQMLRRLSKPQALGHVELFSGSSLAVLLRHMAPLSESDLTILKEFCA
LHEAQLWLHGDGEPHPVEADQSLGYRLEQWDLNLAYRPGDFIQVNAGVNEAMVAQALDWL
KPQADERVLDLFCGLGNFALPLAKAVREVVAVEGVQVMVDRAAANAVSNNLHNAQFFQAD
LSQPLTDAEWAREGFCAVLLDPPRDGAFEVVRKLKSLGAERLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEAS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcatgagagaggcctgcgcttccagcccacgggcggcagcaaggccccgcaa
gtcccgaccggcaaaaagcagcgcctgaacatcgagcgcctggccaacgacggtcgcggt
atcgcgtttttcgaaggtcgcacctggttcgtcatcggcgcactggccggtgaagaagtc
gaggcacgcgtgctcggtgcccacggcaaagtggtcgaggcgcgtaccgagcgggtgttc
aagtccagtgaactgcgtcgcccggcaccgtgcgcccatgctggtcgttgtggcggctgc
agcgtgcaacacctgccccatagcgaacagctcgccttgaaacagcgcatgctcgccgag
caattgtcgaaggtcgccggtgtcgagcccgaagagtgggttgcgcctttgagcggtccg
gagttcgcttatcgccgtcgcgcgcgggtagcggtgcgctgggacatgaaagcgaaaaaa
ctcgaagtcggtttccgcgccgccggcagccaggacatcgtcggcatcgatgattgcccg
gtgctggtacagcccttgcagccgatcatggcccacttgccgcagatgctgcgacgattg
agcaaacctcaggccctggggcacgtggaattgttcagcggctcatcgctggcggtattg
ctgcgccacatggcgccgttgtccgaaagcgacttgaccatcctcaaggaattctgcgcg
ctccatgaagcccagttgtggttgcacggggacggcgagccgcatccggtcgaggccgat
cagtccttgggctatcgtcttgaacagtgggatttgaatctggcgtatcggcccggggat
ttcatccaggtcaatgccggggtcaacgaagcgatggttgcccaggcgctggattggctg
aaaccgcaagccgatgagcgagttctcgatctattctgtgggttgggtaactttgccttg
ccattggctaaagctgttcgcgaagtcgttgcggtggagggtgtgcaggtgatggtcgat
cgcgcagccgcgaatgctgtcagcaacaatctgcataatgcgcagttttttcaggccgat
ttatcccagccgttgaccgatgctgaatgggcgcgtgaaggcttttgtgcggtactcttg
gacccaccgcgtgacggcgctttcgaggtcgtgcgcaagctcaagtccctgggggccgag
cggttggtctatgtgtcgtgcaacccggcaaccctggcgcgcgacacggtcgaattgatc
aagcagggctaccggttaaaacgtgccgggattctcgatatgtttcctcagacggcacat
gtcgaagccatggcgttatttgaagcgagctag
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