KEGG   Pseudomonas umsongensis: HGP31_28765
Entry
HGP31_28765       CDS       T06842                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pum  Pseudomonas umsongensis
Pathway
pum02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pum00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HGP31_28765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pum03021]
    HGP31_28765
Transcription machinery [BR:pum03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HGP31_28765
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Rv2175c_wHTH HTH_31 HTH_24 HTH_29 HTH_17 Sigma70_ECF MerR Peripla_BP_3
Other DBs
NCBI-ProteinID: QJC82089
LinkDB
Position
6341754..6342272
AA seq 172 aa
MSSVPSPQSELVGALYRDHRGWLLAWLRRNVTCPQRAEDLSQDTFVRLLGREELKEPREP
RALLVAIAKGLLFDYFRRAALEQAYLTELMLIPEAEQPSVEEQQMILEDLKNIDRLLGKL
SSKARAAFLYNRLDGLGHAQIAERLGVSVPRVRQYLAQGIRQCYIALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgtcgtcagttccaagcccccaaagtgagctcgtcggtgcgttgtatcgcgaccaccgt
ggttggctattggcttggctacgtcgcaatgtcacctgcccgcaacgggccgaggacttg
agccaggacactttcgtgcgcttactcgggcgcgaagaactgaaagagccgcgcgagccg
cgggcattgctggtggcgattgccaagggcctgctgttcgactacttccgccgcgccgcg
ctggagcaggcttatctcaccgaactgatgctgattccagaagccgaacaaccgtcggtg
gaagaacagcaaatgatcctcgaagacctgaaaaacatcgatcgcctgctcggcaagctg
tcgagcaaggcccgtgcggcgttcctctacaatcgactcgatggcctcggccacgcgcaa
atcgccgagcgccttggtgtatcggtgccgcgagtgcgccagtacctggcccaaggcatc
cgtcagtgctacatcgccttgtacggggagccgacatga

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