Pseudomonas umsongensis: HGP31_29180
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Entry
HGP31_29180 CDS
T06842
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pum
Pseudomonas umsongensis
Pathway
pum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGP31_29180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pum03019
]
HGP31_29180
Enzymes [BR:
pum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGP31_29180
Messenger RNA biogenesis [BR:
pum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGP31_29180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QJC82171
UniProt:
A0AAE7A3F7
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All DBs
Position
6435768..6437636
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AA seq
622 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDMRNPRNPRGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDID
NFGNRVDYVPQQKPAQGRGRRPGAPAQGTAAGAPRGGKPQGGRQNGPRNSDGASTGTPPA
KRSGPRSGAPRDGQARREDSRNRRPARDDQPRSEPAVQNPRGPAPKIMHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcacagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgacccctactcgcgaactcgcggcgcaagtgcacgaaagcttcaag
gtctatgcccgtgacctgaagttcgtcagtgcctgcattttcggtggcgtcggcatgaac
ccgcaggtccaggccatgtcccgtggcgtagacgtgctggtggcctgccctggccgcctg
ctcgacctggccggccaaggcagcgtcgacctgtcccacgtggaaatcctcgtactggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaagaaagtcctcgcccgt
ttgccggccaagcgtcagaacctgctgttctcggcgacgttctccaaggacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgaacagcgcgtattccgcctgccggccagccacaagcgtgcgttgctg
gcgcacctgatcaccgctggcgcctgggaacaggtactggtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaaacacggcctgagcgccgtcgcgatccac
ggcaacaagagccagaatgcgcgcaccaaagccctggccgacttcaaggccggtaccgtg
cgcatcctggttgccaccgacatcgccgctcgcggcctggacatcgaccagctgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagactatgtgcaccgcatcggccgtact
ggccgtgccggtcgttcgggcgaggcgatctcgctggtggccccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcgccgtggaagccgagaaacccgaagctcgcgagcgtccggacatgcgcaac
ccgcgcaatccacgtggcccgcgcggcgatggtccgaatggcggcggtggtggtggcggt
cgcaaggacaaaggcaaggacaagggcaaggaaaaaccagcgggtgagcgcggtgagcgt
ccagcccgtcagcagaagccccgtgaaggcaccccagcccgcgaacagcgtcagccaagc
cagccgccgcgtgccgcagctgatcgtgcgccggacgagttcctggacgacgatatcgat
aacttcggtaaccgcgtcgactacgttccgcagcagaaaccggcccaaggccgcggccgt
cgtccgggtgctccggcacaagggacagccgcaggcgctccacgtggcggcaagccgcag
ggcggtcgccagaacggtccgcgcaacagcgatggcgccagcaccggcaccccgccagcc
aagcgcagcggtccacgcagcggggctccacgagatggccaggcccgtcgcgaagactcc
cgcaaccgccgcccggcccgtgacgatcaaccgcgttcggaaccggccgtgcagaacccg
cgtggtccggcgccgaagatcatgcacaaggagtcgaaggccgatcgcttcccgacacct
gagcagctggatcaactgccaagccgtcctcgtggcgaaaaaccggcattgctgacccgc
aatcgctga
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