Polaribacter sejongensis: NQP51_07045
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Entry
NQP51_07045 CDS
T08505
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pun
Polaribacter sejongensis
Pathway
pun03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQP51_07045 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pun03021
]
NQP51_07045 (rpoC)
03400 DNA repair and recombination proteins [BR:
pun03400
]
NQP51_07045 (rpoC)
Enzymes [BR:
pun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQP51_07045 (rpoC)
Transcription machinery [BR:
pun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQP51_07045 (rpoC)
DNA repair and recombination proteins [BR:
pun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQP51_07045 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UWD33424
LinkDB
All DBs
Position
complement(1724713..1728987)
Genome browser
AA seq
1424 aa
AA seq
DB search
MARKQEKYTVKKFNKISIGLSSPEAILEISKGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNVEGEPLQKMDFLTEEEYLDIADELPQDNQY
LDDTDPNKFIAKMGAECLIDLLARIDLDGLSFELRHKANTETSKQRKTEALKRLNVVEAF
RDSQKNRENHPEWMIMKAVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLSECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACSAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKERISTPEV
KIKGEGLTFYSPEEVTIAFNEEMVDLNAGIKVRTYDVDENGEQVRKIIQTTVGRVLFNEV
VPAKAGYINEVLTKKNLRGIIGGILKATDIPTTGEFLDNIKNMGYKFAFQGGLSFSLGDI
IIPKEKQSMIDEANKEVDIIVGNYNMGMLTQKERYNQVIDIWGRTNNDLTELSMKRLRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINEEDCGTLRGLEVAPLKKND
EIVESLSERIEGRVSLNDVYHPLTEEVLLKANQPISYQLAVAVEKSGIDAVEVRSALTCE
STKGICAKCYGQSLSTLNKVQIGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISEENK
LIAKFDGKVVIDDLRTVTGKDNEGKEIDIVISRTAEIKIIDKKTGITQSTNILPYGSIIF
DKDIKSIKKGDAIVQWDPFNGVIVSEFAGKVKFDNLIQGINYSVEVDEQTGFQEIVMIDS
KNKKIIPSLIIEDNDGNALRSYSLPLGAHLMVTDGDKVESGHTLVKIPRKSGKAGDITGG
LPRVTELFEARNPSNPSVVSEIDGVVSFGKIKRGNREIIVESKTGDISKYLVKLSNQILV
QENDFIKAGMPLSDGATTPSDILRIQGPSAVQMYLVNEIQEVYRLQGVKINDKHFEVVVR
QMMRKVKIIDSGDTLLLENQLVHKIDFIKDNDDIFGMKVVEDAGDSENLSAGQIITARQL
RDENSLLRRNDQNLVTAREAKPATAEQVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKIDTLEGLKENVIVGKRIPAGTGMRAYENILVGPKDEIEKSF
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagagaaatacactgtaaaaaagtttaacaaaatctcaattggttta
tcctcaccagaagctattttagaaatttctaaaggtgaagttttaaaaccagaaactata
aattaccgtacacacaagccagaaagagatggtttattttgtgagcgtatttttggtcct
gtaaaggattatgaatgtgcttgtggaaagtacaaaagaattcgctacaaaggtatcgtt
tgtgatagatgtggtgtagaagtaactgaaaagaaagtacgtagagaaagagtagggcat
atcaacttagttgtgcctgttgctcatatttggtattttagatcattacctaacaaaatg
ggataccttttaggtttaccatctaagaagttagatatgattatttactatgaacgttat
gtagtaattcaaccaggtattgcaaagaatgtggaaggagagccattacaaaaaatggat
ttcttaacggaagaggaatatttagatattgctgatgagttaccacaagataaccaatac
ttagatgatactgacccaaacaagtttatcgctaaaatgggtgctgaatgtttaattgat
ttattagcgcgtatcgatttagatgggttgtcttttgaattaagacacaaggcaaataca
gaaacgtctaaacaacgtaaaactgaagcattaaaacgtttaaatgttgttgaagcattt
agagactctcagaaaaatagagagaatcatccagaatggatgattatgaaagctgtacca
gttattccaccagaattaagacctttagttcctttagatggtggacgttttgcaacttca
gatttaaatgatctttatagaagagttattattagaaacaatcgtttaaaaagattggtt
gaaataaaagctccagaagttattttacgtaatgagaaacgtatgttacaagaatcagta
gattctttatttgacaatacacgtaaatcatctgcagtaaaaactgaatctaacagacct
ttaaaatctttatcagattcattaaaaggtaaacaaggacgtttccgtcagaatttatta
ggaaagcgtgttgattattctgcacgttctgtaattgttgttggaccagaaatgaaatta
tctgaatgtggattgccaaaagatatggcagctgaactttacaagccttttgtaattaga
aaactaattgaaagaggaattgtaaaaacagtaaaatctgcaaagaaaataatagataga
aaagaaccagttgtttgggatattttagaaaatgtaattaaaggacatccagttttatta
aacagggctcctactttacacagactaggtatacaagcttttcaaccaaaattaattgaa
ggaaaagcaatccaattacacccattagcatgttctgcatttaatgcggattttgatggg
gatcaaatggcggttcacttaccattaggaccagaagctattttagaagcgcaattatta
atgttggcttctcataatatcttaaatcctgcaaatggtgcaccagtaacagttccttct
caggatatggtacttggtttatactatatgactaaagagagaatctctactccagaagtg
aaaattaaaggagaaggattaactttttattcaccagaagaagtaactattgcttttaac
gaagaaatggtagacttaaatgctggaattaaagtaagaacttacgatgttgatgagaac
ggagagcaagttagaaaaataatacaaactactgttggtagagtattatttaacgaagtt
gttcctgcgaaagctggttacattaatgaggtattaactaagaaaaacttacgtggaatt
attggtggtattttaaaagctacagatattcctactacaggagaattcttagacaatatt
aaaaatatgggatataaatttgccttccaaggtggtttatctttctcattaggggatatt
attattcctaaagaaaaacaatctatgattgatgaagccaacaaagaggtggatattatt
gtaggaaattataacatgggtatgttaacgcaaaaagagcgttataatcaggtaattgat
atttggggtagaaccaataacgatttaactgagttatctatgaaacgtttacgtgaagat
caacaaggtttcaactcggtatacatgatgcttgattctggtgcaaggggttctaaggag
cagattcgtcagttaacaggtatgcgtggattaatggcaaaacctaagaaatctactgca
ggtggtggagaaattattgagaatccgattctttctaactttaaggaaggtttatcaatt
cttgaatactttatctctactcacggtgctcgtaaaggacttgcggatacggctttaaaa
acggcagatgctggttacttaactcgtagattagtagatgtttctcaagatgttatcatt
aacgaagaagattgtggtacattaagaggtttagaagtagcacctttaaagaaaaatgat
gagattgtagaatctttatcagaaagaattgaaggtagagtttcattaaacgatgtatat
cacccgttaacagaagaagttcttttaaaagcaaatcaaccaatttcttatcaattagca
gtagctgttgagaagtctggaattgatgctgtagaagtaagatctgctttaacttgtgaa
tctacaaaaggtatttgtgcaaaatgttatggtcagagtttatctacccttaacaaagta
caaattggtgaagcagttggtgtaattgcagcacaatctattggagaacctggtacacag
ttaacattacgtacattccacgttggtggggttgcaggtaatatttctgaagagaataaa
ttaattgctaagtttgatggtaaagttgttatagatgatttacgtacagtaactggtaaa
gacaatgaaggtaaagaaattgacattgtaatttctagaactgctgagattaaaattata
gacaagaaaacaggaattactcaaagtacgaatatccttccttatggttctattatattt
gataaagatataaaatcaatcaaaaaaggagatgctattgtacaatgggatccatttaac
ggggttattgtttctgagttcgctggaaaagtgaagtttgataatttaatacaaggtatc
aattactctgtagaagtagatgagcaaactggtttccaggagattgtaatgatcgactcg
aaaaacaagaaaatcataccatctttaattattgaagataatgacggtaatgctttacgt
tcttatagtttacctttaggtgcacacttaatggtaactgatggagataaagtagaaagt
ggtcatactttagttaaaataccaagaaaatctggtaaagctggggatattacaggaggt
ttaccacgtgtaacagaattattcgaagcacgtaatccttctaatccatctgttgtttca
gagattgatggtgttgtttctttcggtaaaattaaacgtggaaatagagaaatcatcgtt
gaatctaaaactggagatattagtaagtatttagtaaaactttctaatcagattttagtt
caagaaaatgactttattaaagctggtatgccattatcagacggagctacaactccttca
gatattttaagaattcaaggtccatctgcagtacaaatgtacttggtaaatgaaattcaa
gaagtatatcgtttacagggtgtaaaaattaatgacaagcattttgaggttgttgttcgt
caaatgatgcgtaaagttaaaattatagattctggtgatactttattattagagaatcaa
ttagttcataaaattgactttatcaaagacaatgatgatatttttggaatgaaggttgtt
gaagacgctggagattcagaaaacttaagtgcaggtcaaattattactgctcgtcaatta
agagatgaaaattctttattaagaagaaatgatcagaacttagtaacggcaagagaggct
aaaccggcaacggcagagcaagttttacaaggtattacaagagcatcacttcaaacaaaa
tcgtttatttctgcagcttctttccaggaaactacaaaagtattaaacgaggctgctgtt
agtggtaaaatagatacattagaaggcttaaaagaaaatgtaattgttggtaagagaatt
ccagcaggtacaggtatgagagcttatgaaaacattctagttggtcctaaagacgaaata
gaaaaaagtttctaa
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