Polaribacter sejongensis: NQP51_10925
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Entry
NQP51_10925 CDS
T08505
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pun
Polaribacter sejongensis
Pathway
pun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQP51_10925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pun03019
]
NQP51_10925
Enzymes [BR:
pun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NQP51_10925
Messenger RNA biogenesis [BR:
pun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NQP51_10925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
ERCC3_RAD25_C
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UWD30651
LinkDB
All DBs
Position
complement(2629248..2630573)
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AA seq
441 aa
AA seq
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MTFKDLGLSAALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVL
QHLAETKHPKYRPLRALVLTPTRELAAQVHDNVREYSKYVNIKSAVIFGGVNAKPQIATL
RSGVDILVATPGRLLDLHSQKAVSFNRIDVLILDEADRMLDMGFARDLNKLISFMPAKRQ
NLMFSATFSADIKKLASGILNNPVSVEAEPQNSTAKKVTHNVYKVDKGQKTEFTIKLIKD
GNWNQVLIFTRTKHGANKLTEKLIKAGISAAAIHGNKSQGARTKALRNFKENTIKALVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEETEYQNEIEK
LLKEKLNTSIVAGFEPTDTAAPKRAATQSKGSFGKKTRSSNGGSSQGDKPKNKPHFKGNK
PAGSTSGRGRTGAPKKKRFRD
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagatttaggtttatccgctgcattagtaaaagcggttgaagaaaaagga
tataccaaaccatccccaatacaagaaaaagcaattccacatattttagaaggtaaagac
attttagcttctgcacaaacaggaacaggaaaaacagctggttttacattaccagtttta
caacatttagctgaaacaaagcacccaaaatatagacctttaagagcgttagtgttaacg
ccaacaagagaattggcggcgcaagtacacgataatgtaagagagtatagtaaatatgta
aatataaaatctgctgtaatttttggtggtgtaaacgcaaaaccacaaatagcaacccta
agaagtggtgtagatattttggtagcaacaccaggtagattattagatttacacagtcag
aaagcagtttcttttaacagaattgatgttttaattttagacgaagcagatcgaatgtta
gacatgggttttgctagagacttaaataaactgattagttttatgcctgcaaagcgtcag
aatttgatgttttcggcaactttttctgctgatattaaaaaattagcatcaggtatttta
aataatcctgtctctgtagaagctgaacctcaaaattctacagccaaaaaagtaactcat
aatgtttataaagttgataaaggccaaaaaacagagtttacgattaagttgataaaagac
ggaaattggaaccaagttttaatctttacaagaaccaagcatggagctaacaaattaacc
gagaaattgattaaagcaggaatttctgctgcagcaattcacggaaataagagtcagggt
gcaagaacaaaagcattaagaaactttaaagaaaacactattaaagcattagttgcaaca
gatattgcagcacgtggtttagatattcctttattacctcacgttattaactttgagttg
ccaaatgtaccagaagattatgtgcatagaattggtagaacgggtagggcaggagcagct
ggagaagcaatttctttagtttgtagtgaagaaactgaataccaaaatgaaattgaaaaa
ttattaaaagagaagttaaacacttctattgtagcaggttttgagcctactgatactgcg
gcacctaaaagggcagcaacacaaagcaaaggatcttttggtaagaaaactagatcttca
aatggtggttcttctcaaggagacaagccaaaaaataaacctcattttaaaggaaataaa
ccagcaggttctacttctggaagaggaagaactggagcacctaagaagaagcgttttaga
gactag
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