Rubellicoccus peritrichatus: RZN69_12305
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Entry
RZN69_12305 CDS
T09488
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
puo
Rubellicoccus peritrichatus
Pathway
puo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
puo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZN69_12305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
puo03019
]
RZN69_12305
Enzymes [BR:
puo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RZN69_12305
Messenger RNA biogenesis [BR:
puo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RZN69_12305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
RecX_HTH2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WOO39398
UniProt:
A0AAQ3QPS5
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All DBs
Position
complement(3121982..3123418)
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AA seq
478 aa
AA seq
DB search
MSEITFEMLPLAAPIQQALADKGYTQPSPIQAQSIPVLLEGRDLMACAQTGTGKTASFAL
PILHRLTEIRRRPERHEVRSLILTPTRELAVQVADSFRTYGKNMRFSIGLVHGGVSQYPQ
VKALNRGLDVLVATPGRLVDLYEQGHVDLSGVGCFVLDEADRMLDMGFIHDIRKIADELP
EDRQTVFFSATMAPTITKLANSLLDDPEEIRIAPKVTTAEKITQSILFVQQEDKHDLLLN
LLNTHFDETEGELSLVFSRTRHGARKLAEKLNRKGIRADAIHGDKTQAARQKTLDRFRDG
RTPVLVATDVAARGIDVKNITLVINFDLPQEADNYVHRIGRTARAGESGRAVSFCSGQEL
PLLRDVERLIKQSVPVDKDHEHHAEGIANRYNKGGTKGGGGGSFNKSNKKRRFGNRNGGG
SGYSKNGGGKSYGRGGSASGGKKPNGKRNFNRGQGGGGGFAGKSKRSKNGGRKVAAKG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaataacttttgaaatgctgccattggcagctcctatccagcaagctcttgcg
gacaaaggctacacgcagccttctccgatccaggcgcaatcgatccctgtccttttagaa
gggcgcgatctaatggcttgtgcccagactggaaccggcaaaacagcttcctttgcgcta
ccgattctgcatcgtttgacagaaatccgtcgccggcctgagcgccacgaagtacgcagc
ctgattctgacccccactcgcgagcttgctgtgcaggtcgctgacagcttccgcacttac
ggcaagaacatgcgtttcagtattggactcgtccatggcggcgtctcccaatatcctcag
gtaaaggcattaaacagaggccttgatgtccttgtggccacaccaggccgactcgtcgat
ttgtatgagcaaggccatgtggatttgtcaggtgttggatgtttcgttttggacgaagcc
gatcgtatgctcgacatgggtttcatccatgacattcgcaagattgcggacgagctacct
gaagatcgtcagactgttttcttctccgccacaatggcccccacgattaccaagctggcc
aacagcctgcttgatgatccggaagaaatccggatcgcaccaaaagtaacgactgctgaa
aaaatcacgcagagcatactctttgtccaacaggaagataaacacgatcttctgcttaat
ctgctcaacacacattttgatgaaaccgaaggtgagctcagtctcgttttcagtcgcaca
cgtcacggggcacgaaagctggctgaaaagttaaaccgcaagggaatacgtgcggacgct
attcacggtgacaaaacgcaagctgctcgccaaaagacactcgaccgttttcgtgatggg
cgcactcccgtgcttgttgcaaccgatgttgctgcccgcggaattgacgtaaaaaacatc
acactcgtgatcaacttcgatctcccacaggaagcggacaactatgtgcaccggatcggt
cgcacagcccgcgccggtgaaagtggccgtgccgtctctttttgctcaggccaagaatta
ccactacttcgtgatgtagagcgcctgatcaagcaaagcgttccagtggacaaagatcat
gagcatcatgcagaaggtatagcgaatcgctacaacaagggtggtacaaaaggcggcggt
ggcggctctttcaacaagagcaataaaaagcgccgcttcggtaaccgcaacggcggcggt
agtggctactccaagaacgggggcggaaaatcttatggtcgcggcggaagtgcctctggc
ggcaagaagccaaatggcaaaagaaatttcaatcgcggacaaggcggtggcggcggattt
gcaggcaaaagcaaacggagcaaaaatggcggcagaaaagttgccgcaaaaggttaa
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