Psychrobacter urativorans: AOC03_00230
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Entry
AOC03_00230 CDS
T04087
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pur
Psychrobacter urativorans
Pathway
pur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC03_00230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pur03019
]
AOC03_00230
Enzymes [BR:
pur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOC03_00230
Messenger RNA biogenesis [BR:
pur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOC03_00230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALF58664
UniProt:
A0A0M4U504
LinkDB
All DBs
Position
48252..49406
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AA seq
384 aa
AA seq
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MSNFTTFTDLPLSAPTLKAIDDLGFTELTAIQAQILPHTLAHQDAIGQAQTGTGKTATFL
LTIMEALLTRPFASDEDRYLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGT
NYETQQHELERQYVDILIATPGRLIDLMNKGMVYLDRVEVLVLDEADRMLDMGFIPDIKR
LVGRMPPNTDRQSLLFSATFNQDVMNLAYRWLHEPQFVEIEPEHKTSELVEQHFYLLTES
QKLEALERILNDEGVDKVIIFANRKDQVKRLYHKLRQGHNIVMLSGDVIQQKREKYLQRF
KDGHASILVATDVAGRGIHVDDISHVINYTLPEQPDDYVHRIGRTGRAGQTGISISFVSE
DDAFNLPALEKHLDTKFTLEQWQQ
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaacttcacgacttttacggacttaccactgtcagcaccgacattaaaagcaatc
gatgacttagggtttaccgagctgactgccattcaagcgcaaatattgccacatacctta
gcgcatcaagatgctatcgggcaggcgcaaacgggtacaggaaagaccgccacatttttg
ctgacaattatggaagcattgcttacgcgtccttttgcgagtgatgaagatcgctattta
ggtgagccacgtgccgttgtgatggcgcctactcgcgagcttgcgcagcagatatttgat
gattgtatcgcattgactaaatatacctcgctgcatagtgtatgtatcatgggtggtacg
aattatgaaacgcagcagcatgagcttgagcgtcaatatgttgatattttgattgccaca
ccaggacgtctgattgatttaatgaataaaggcatggtatatcttgaccgtgtggaagta
ttggtattagatgaagccgaccgtatgttggatatgggttttattcctgatatcaagcgt
ttggtaggtagaatgccgccgaatactgaccgccaaagcttactgttttcggcaacattt
aaccaagatgtgatgaatttagcctatcgctggttgcatgagccacagtttgtcgaaatt
gagccggaacataagaccagtgagctggtagagcagcatttttatctactaacagaaagt
cagaaattagaagcactagagcgtattctcaacgatgagggcgtggataaagttattatc
tttgccaatcgtaaagaccaagtgaaacgtctgtatcataaactgcgtcaagggcataac
atcgttatgctatctggtgatgtgattcagcaaaaacgtgagaaatatttacagcgtttt
aaggatggtcatgcgtcaatattggtagcgaccgatgtcgctgggcgcggtattcatgtt
gacgatatcagtcatgtgattaattatacgttgccagaacaacctgatgattatgtgcat
cgtattggacgcactggacgcgctggacagacaggcattagtattagctttgttagcgaa
gacgatgcctttaatttaccagcattagagaagcatttagataccaagttcactcttgag
caatggcagcagtaa
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