Psychrobacter urativorans: AOC03_02380
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Entry
AOC03_02380 CDS
T04087
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K14159
ribonuclease HI / DNA polymerase III subunit epsilon [EC:
3.1.26.4
2.7.7.7
]
Organism
pur
Psychrobacter urativorans
Pathway
pur03030
DNA replication
pur03430
Mismatch repair
pur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOC03_02380
03430 Mismatch repair
AOC03_02380
03440 Homologous recombination
AOC03_02380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pur03032
]
AOC03_02380
03400 DNA repair and recombination proteins [BR:
pur03400
]
AOC03_02380
Enzymes [BR:
pur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AOC03_02380
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.4 ribonuclease H
AOC03_02380
DNA replication proteins [BR:
pur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AOC03_02380
RNase H
AOC03_02380
DNA repair and recombination proteins [BR:
pur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AOC03_02380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_H
RNase_T
Rv2179c-like
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
ALF59036
UniProt:
A0A0M4TU07
LinkDB
All DBs
Position
570630..572255
Genome browser
AA seq
541 aa
AA seq
DB search
MSDHFIAAPYVTNHNATDPLAAKTDATVAYADGACKGNPGAGGWGAHLIFSNGQTQDLYG
GDSETTNNRMELMGAIQALNHSPRELKLEIWTDSSYVKKGITEWIEGWKKRGWKTASKKP
VANQDLWQQLDELCQARDVDWYWVKGHAGHAGNEKADELANLGVTSNSGHAIVNNEQSPV
ATNDNVSENINDSIRKKKVSLMSDKTEILSDDDWLTNDILGFDMLDDDSDEEFSAEPHDT
ILTELSLIESNHQPNNATPPMSAHIMTADSLIIDHRESDVSVDLPKFDGDTSRANPHFRP
LLPKPIHRHEANRQLIMDTETTGLDPLKGDRVIEVGIVEMIGRKFTGEKLHVYINPQRGM
DEVVIRIHGISEAFLADKPTFDQVAQPLYEFMDGAEIIAHNASFDMSFLSMEFSKVGITD
FAQRVQVTDSLVMAKQQYPGQKNTLDALVRRLNVGKQDRTFHGALLDSEILAEVYLAMTG
GQVSLAIEEEGQSDGGQTAHTQFATLAALLVESSTDSSENQNWFASLADQYPEIKTKMAQ
W
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaccactttatagcagcaccatacgtcaccaaccataacgccactgacccgcta
gcagccaaaactgacgcaacggtggcttatgccgatggtgcatgtaaaggcaaccctggt
gcaggaggttggggtgcgcatctgatatttagtaatgggcaaacgcaagatttgtacggt
ggcgattccgaaaccaccaataatcgcatggagctgatgggggcaattcaagcgctcaat
cacagtccacgtgagttaaagctagaaatttggacagactccagttatgtcaaaaaaggg
ataacggagtggattgaaggttggaaaaaaagaggctggaaaacagccagtaaaaaacca
gtcgccaatcaagacttatggcagcaattagatgagctttgccaagcacgcgatgtagat
tggtactgggtaaaaggtcatgctggacatgccggtaatgaaaaagcagacgagctagcc
aaccttggcgttacctctaacagtggtcatgcaattgtaaataatgaacaatcgccagtc
gccactaatgataatgtgagtgaaaatattaatgacagtatccgtaaaaaaaaagtgtcg
ttaatgtctgataaaactgaaatactatccgatgatgattggctcacaaacgatatttta
ggctttgacatgttggatgatgactcagatgaggaattctccgccgaaccccacgacact
attttaactgagctgtctttaattgaatccaatcaccaaccgaataacgcgacaccgccg
atgagtgctcatatcatgaccgcagacagcttaataatagaccaccgtgaatcagacgtg
tcagtagacttgccaaaattcgatggtgataccagtcgtgccaacccacactttcgtccc
ttattgcccaagcctattcatcgtcatgaagccaatcgacagctgattatggatacggaa
accacaggattagatccactcaaaggggatcgcgtcattgaagtcggtattgtggagatg
attggtcgtaagtttaccggtgaaaagctgcatgtctatatcaatccacagcgtggcatg
gatgaagtggtcattcgtattcatggtatctctgaggcatttttagctgacaaaccaact
tttgatcaagtcgcgcaacctttgtacgagtttatggatggcgcagaaatcatcgctcat
aacgcctcatttgatatgagcttcttgtccatggaatttagcaaagtgggtattacagat
tttgctcagcgcgtgcaggtaaccgactcattggttatggcaaaacagcaatatccggga
caaaaaaacacgcttgatgcgcttgtacgtcgtttaaacgttggtaagcaagaccgtacc
tttcacggcgcattattggactcagagattttagctgaagtctatttagcgatgacgggg
ggtcaagtatccttagccattgaagaagaaggtcaatctgatggcggacaaaccgctcat
actcagttcgccacgcttgccgctttattagtagagtctagtactgacagtagcgaaaat
caaaactggtttgcaagtttggcagatcaatatccagaaattaaaactaaaatggcacaa
tggtaa
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