Psychrobacter urativorans: AOC03_04335
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Entry
AOC03_04335 CDS
T04087
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pur
Psychrobacter urativorans
Brite
KEGG Orthology (KO) [BR:
pur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pur03016
]
AOC03_04335
Enzymes [BR:
pur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AOC03_04335
Transfer RNA biogenesis [BR:
pur03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AOC03_04335
Prokaryotic type
tRNA splicing ligases
AOC03_04335
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GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALF59375
UniProt:
A0A0M5MPU3
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All DBs
Position
complement(997753..998967)
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AA seq
404 aa
AA seq
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MSIQLILNDSGHHGVPVKIYTTDVEQGAMDQLRNVAKLEFIHSHIAVMPDVHVGIGATVG
SVIPTKSAIIPVAVGVDIGCGMNAVRLSLTASDLPDNLRSLRLAIEQQVPVGFNMHQQIS
AKMSTLDPLNKRLQPITDKHPGLLKMLRGFERTWAKQLGTLGGGNHFIELCLDENQDVWV
MLHSGSRGIGNCIGRYFISLAKKERQSRFGHVPDQDLSYFAEGSDSFADYIEAVEWAQDY
ALENRREMMRLVINALQSTQSGLPRFQLTKEAINCHHNYVNEEVHFGEQVYVTRKGAISA
YEGELGIIPGSMGAKSFIVRGLGNHESFCSCSHGAGRRMSRSKAVRSFTIDELKAQTEGV
ECRKDKSVLDEIPSAYKDIDEVMANQSDLVEVVHTLKQVMCIKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgagtattcaactaatcttaaatgatagtggacaccacggtgtacccgtcaagatttat
accacggatgtggaacaaggcgcgatggatcagctgcgtaatgtggcaaaattagaattt
atccactcacatatcgcggtcatgccggatgtgcatgtgggtatcggtgcgacagtaggc
agcgtgattccgaccaaatcggcgattattccggtggcggtgggggtggatatcggttgc
gggatgaatgcggtgcgcttatcgctaacggcaagtgacttacccgataatctaaggtca
ttgcgccttgcgattgagcagcaagtgccagttggtttcaatatgcatcagcaaatcagc
gctaagatgtcgaccttagatccgcttaataaacgcttgcaaccgattacggataaacat
ccgggtttgctaaaaatgctcagaggttttgagcggacgtgggcaaaacagctgggtacc
ttgggcggtggcaatcattttatcgagctatgtttggatgaaaatcaggatgtctgggtg
atgctacattcgggcagtcgcggtattggcaattgtatcggtcgctactttatcagtctc
gccaaaaaggagcgccaatcacgctttgggcatgtgccggatcaagacttgtcttatttt
gctgaaggctcggacagttttgccgattacatcgaggcagtcgaatgggcgcaagactat
gctttggaaaaccgacgcgagatgatgcgtttggtcatcaatgcgttgcaatcgacgcaa
tcaggattaccacggtttcagctgaccaaagaggcgattaactgccatcataattacgtc
aatgaagaagtgcattttggcgagcaggtttatgtcacccgtaaaggcgcaattagtgct
tatgaaggcgagctagggattatccccggttcaatgggcgcgaagtcttttatcgtacgc
ggtttaggtaatcatgagtcattctgctcgtgctcgcatggcgctggtcgacgcatgagc
cgcagtaaagcggtgcgctcattcactatcgatgagctaaaagcacaaacggaaggcgtt
gagtgccgcaaagataaaagcgtacttgacgagattcctagcgcctataaagacattgat
gaggtgatggcaaatcagtcggacttagtagaagtagtacatacgctcaagcaagtaatg
tgcattaaaggctaa
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