Psychrobacter urativorans: AOC03_04945
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Entry
AOC03_04945 CDS
T04087
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pur
Psychrobacter urativorans
Pathway
pur03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pur00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOC03_04945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pur03021
]
AOC03_04945
03400 DNA repair and recombination proteins [BR:
pur03400
]
AOC03_04945
Enzymes [BR:
pur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOC03_04945
Transcription machinery [BR:
pur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOC03_04945
DNA repair and recombination proteins [BR:
pur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOC03_04945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ALF59483
UniProt:
A0A0M3V8N3
LinkDB
All DBs
Position
complement(1140344..1144570)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLDIMQSPTGNGNREFDSIQITLASPDVIKSWSHGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDFECLCGKYKRRKFQGVICEKCGVEVTTAKVRRDRMGHIDLASPVAHIWFLK
SLPSRIGLLLDMTLRDIERVLYFESYIVTEPGLTSLEKYQLLDDEDYFKALEEFGDEFVA
KMGAEAIQDLLKDIDLDIEIDDLREAIPQTGSETKLKKMSKRLKLLEAFRDSNNKPEWMV
MTILPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRM
LQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVG
PTLRLHQCGLPKKMALELFKPFTYNKLLSHGLATTIKAAKKMVEREEPQVWDMLAMVIRE
HPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLTLEAQL
ESRALMMSTNNILSPANGEPIIVPSQDVVLGLYYISRSSVNAKGEGMIFATVNEALRAIG
SNDLHVNAKIKVRVTETHIDEEGNHTKETSIKDTVAGRLLIWNIMPVGMAFEECNQEMTK
KNISRLINSCYRKMGVKDSVMFADQLMYLGFAQATLSGVSIGLDDMVIPPLKKQIIEVAE
AEVREIEDQFEQGFVTAGERYNKVVDIWSRTNDKVAKAMMDNLATDKVINAQGIEEEQKS
FNSIFIMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVAQDLVITTDDCGTDVGLLMTPHIQGGEIIEKLGDL
VLGRVTARDVTYNDDESKILIPAGTLIDEHWVDVLDDNAIDDIWVRSVITCNVAHGVCAQ
CYGRDLARGHKVNIGESVGVMAAQSIGEPGTQLTMRTFHVGGAASSASVDNSISVRSAGQ
AHFENMKTVEHIDGHLVIVSRSAEIALTDELGRERERYKVPYGSSVLVKNEEQVEGGQTI
AKWDPHTHPIITEFAGTARFSEITDGLTATVKVDDATGMSSFEILATRDRSSSAKDLRPA
IILNTDEGKEVVYFLPAETIIRVGDGEKVAAGSILGRVPQASSGTKDITGGLPRVADLFE
ARRPKDHAIMAEMSGVVSFGKETKGKNRFIITNEDGEIHEELIPKWRQINVYENETVARG
EVIADGPQNPHDILRLKGQTALADYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEIT
DSGDSNHFKGDQVEYVDIKALNEKLTAEDKFPVQFERQLLGITKASLATESFISAASFQE
TTRVLTAAAVMGKVDELRGLKENVVVGRLIPAGTGLAYHKARKEKAEQKLQDKDINAAFD
ITTANSDTKDFTSFDEAFAQELSQGSQS
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttactcgatatcatgcaaagccctaccggcaacggtaaccgtgagtttgat
agcatccaaattaccttagcctcacctgacgtcattaagtcatggtcgcatggtgaagtg
aaaaagcctgaaaccattaactatcgcacctttaagcctgaacgtgacggtctgttctgc
gccaagatttttggccctgtaaaagattttgaatgtttatgtggtaaatacaagcgtcgt
aagttccaaggcgttatctgtgaaaaatgtggcgttgaagtcactaccgctaaagtgcgc
cgtgaccgcatgggtcatattgacctagccagtcctgttgcgcatatttggttcttaaaa
tcattaccaagccgcatcggtctgttattagacatgacgcttcgtgatatcgaacgcgtc
ctatattttgaaagctatatcgtcactgagccgggtctgacttctttagagaagtaccaa
ttgcttgatgatgaagattatttcaaagcgttggaagagtttggtgatgaatttgtcgcc
aagatgggcgcagaagcgattcaagacctattaaaagatatcgatttagacatcgagatt
gatgatttgcgtgaagcgattccacaaacaggttctgagacgaagcttaagaaaatgtct
aagcgtcttaaattattagaagcgttccgcgattctaataataaacctgaatggatggtc
atgaccatcttgccagtactaccaccagatttgcgcccgctagtaccactagaaggtgga
cgttttgcaacgtcagatttaaatgacttgtatcgccgtgtgatcaaccgtaacaaccgt
cttaagcgtctgcttgaattaagcgcgcctgatatcatcgtacgtaacgaaaaacgtatg
ttgcaagagtcagtagatgcgttgttagacaacggtcgtcgcggtcgtgcgattacgggt
agtaacaagcgtccattgaaatctttggctgatatgatcaaaggtaagcaaggtcgtttc
cgtcagaatttgcttggtaaacgtgttgattattctggtcgttctgtaatcgttgttggt
ccaacgttacgtttgcatcagtgtggtttgccgaagaaaatggcacttgaactattcaag
ccatttacttataacaagctattatcacatggtttagcgacgacgattaaagctgccaaa
aagatggtagagcgtgaagagccacaagtgtgggatatgctagcgatggtcattcgtgag
catccagtactcttgaaccgtgcgccaacccttcaccgtttgggtctacaggcatttgag
ccagtactgattgaaggtaaagcgattcagctacacccattggtttgtactgcgtttaac
gccgactttgacggtgaccaaatggcagttcacgtaccgttgaccctagaagcacagctt
gaatcacgtgccttgatgatgtccaccaacaacatcttgtcacctgctaatggtgagcca
attatcgtaccatcgcaagacgttgtattgggtctgtattatatcagtcgctcatcagtg
aatgctaaaggcgagggcatgatttttgccaccgttaatgaagctttacgtgcgattggt
tctaacgacttacacgtcaatgccaaaattaaagtacgtgtgactgaaacgcatattgac
gaagaaggcaatcatactaaagagacgagtatcaaagataccgttgcaggtcgtctatta
atttggaacatcatgccagttggtatggcgtttgaagaatgtaaccaagagatgaccaag
aaaaacatctcacgtcttatcaactcttgctatcgtaagatgggtgtgaaagacagcgtt
atgttcgctgaccaattgatgtatcttggttttgcacaagcgacgttatctggtgtttca
attggtctggatgacatggtcattccgccattgaaaaaacaaatcatcgaagttgccgaa
gctgaagtgcgcgaaattgaagatcaattcgagcaaggctttgtgacggctggtgagcgt
tataataaagtagttgatatctggtcacgtaccaatgacaaagtcgccaaagcgatgatg
gataacttggcaacggataaagtaattaatgcgcaaggcatcgaggaagagcaaaagtca
tttaactctatcttcatcatgtcagattctggtgctcgtggtagtgcggcgcagattcgt
cagcttgctggtatgcgtggcttgatggctaaaccggatggctcaattattgagaccccg
attaaagccaacttccgcgaaggtttgaccgtacttcagtactttatctcgactcacggt
gcacgtaaaggtcttgcggatacggcattgaaaacggctaactccggttatctgacgcgt
cgtttggttgacgtggcacaagatttggttattacaaccgacgactgtggcactgatgtg
ggcttgctcatgacgccgcatattcaaggtggcgagatcattgaaaagcttggcgatctt
gtattgggtcgtgtgacggcacgtgatgtcacctacaatgatgatgaatcaaaaatctta
attccagcgggtacgttaattgacgagcattgggtcgatgtacttgacgacaatgcgatt
gatgatatctgggtgcgctcggtcattacttgtaatgtggcgcatggtgtttgtgcacag
tgttatggtcgtgaccttgcccgtggtcataaagtcaatatcggtgaatctgttggtgtt
atggcagcccagtcgatcggtgaacctggtactcagttaaccatgcgtacgttccacgtt
ggtggtgccgcaagttcagcatcagtggacaatagcatttctgtacgtagcgcgggtcaa
gcacattttgagaatatgaaaaccgttgagcatattgatggtcacttggttatcgtatcg
cgctcagctgaaattgccttaaccgatgagttaggtcgtgagcgtgaacgttataaagta
ccttacggttcaagcgtacttgtgaaaaatgaagaacaagtcgaaggcggtcaaactatc
gctaaatgggatccgcacacgcatcctatcatcacagaattcgctggtaccgcacgcttt
agtgaaatcactgatggcttgacggctaccgtaaaagttgatgatgcgactggtatgagc
tcgtttgagattcttgcgacgcgtgaccgttcaagctcagcaaaagacttacgtccggcg
attatcttgaacaccgacgaaggtaaagaagtggtttacttcttaccggctgaaaccatc
attcgtgttggcgatggtgaaaaagtagcagcaggttcgattctaggtcgtgtaccgcag
gcctcatcaggtaccaaagatattaccggtggtctaccacgcgtagccgacttattcgaa
gcccgtcgtccaaaagatcatgcgattatggcagagatgagtggcgtcgtcagcttcggt
aaagaaaccaaaggtaaaaaccgctttattattactaatgaagatggtgaaatacatgaa
gagctgattccgaaatggcgtcagattaacgtctatgaaaatgagaccgtagcacgcggt
gaagttattgctgatggtccacaaaacccgcacgatatcttacgccttaaaggtcaaacc
gcgcttgctgactatatcgttaacgaagtacaagacgtataccgcttgcagggtgtaaaa
atcaacgacaagcacattgaagttattattcgtcaaatgttgcgtaaagttgagatcaca
gatagcggcgactcaaatcactttaaaggtgaccaagttgaatatgttgatatcaaagca
cttaacgaaaaactaacggcggaagacaaattcccagttcagtttgagcgtcagctgcta
ggtatcaccaaagccagcttggcaaccgaaagctttatctcagccgcgtctttccaagaa
accacgcgtgtattaacggcagctgcagtaatgggcaaagtcgatgagctacgtggtctg
aaagaaaacgtggtggttggtcgtttgattcctgctggtacggggcttgcttaccataaa
gctcgtaaagagaaagctgagcagaagctgcaggataaagacatcaatgctgcatttgat
atcacaacggcaaatagtgatactaaagacttcactagctttgatgaagcatttgcacaa
gagctgagccaaggtagtcaatcttaa
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