Pollutimonas thiosulfatoxidans: CKA81_02285
Help
Entry
CKA81_02285 CDS
T05795
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pus
Pollutimonas thiosulfatoxidans
Pathway
pus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKA81_02285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pus03019
]
CKA81_02285
03009 Ribosome biogenesis [BR:
pus03009
]
CKA81_02285
Enzymes [BR:
pus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CKA81_02285
Messenger RNA biogenesis [BR:
pus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CKA81_02285
Ribosome biogenesis [BR:
pus03009
]
Prokaryotic type
rRNA processing factors
CKA81_02285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Motif
Other DBs
NCBI-ProteinID:
QAA92801
UniProt:
A0A410G970
LinkDB
All DBs
Position
complement(480866..483850)
Genome browser
AA seq
994 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSY
GEDRHGFLPFKEVARTYFKEGVDVRAARIQDALTEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMDQLDIPAGMSIIARTAGIGRNVEELQ
WDLSYLMQLWNAIDGAARENPAPILIYLESSLVIRAIRDYYSPEIGEILIDTDEIYEQAT
AFMSVVMPDNVQRVKMYRDDVPLFSRFQIEHQIETAYSRTVQLPSGGSVVIDHTEALVAI
DVNSARSTRGADIEETAMRTNLEAADEVARQLRLRDLGGLIVIDFIDMEEAKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVVRDAESSALQ
VLRLLQEEAMKEGTASLHAQVPVDVATFLLNEKRGDIAKIESRLKVNLILIPNKNLETPH
HHIERLRHDDPRLEEIKTSFELVTQPESQLTWSPNKAQDAAKSRPEALVKSITPSQPAPV
SSVPAARAIAAATAQGPGLFKRLLNWLTGGDAAPVAVEPAKETAGRSSSGNRSKGGRSGD
RRERGHGDRNNRNRRGDRRHDTAEGTAEDATQTAAARGRRPAGTHAAAEPANATRTAHPR
HADATAETDEATPSSRGGRSRRGRGRNRREEGQTDTVEVDSSVAVAAAVVATETLAAADT
TQADANVADSDLITETGAEGDQQDPERKRRRRRSRRGRRSAEGSTENSTEESSSDSDDNE
AFVSHETPAFNPGVLPTIASGQGQFQESLSEAGEVRDTQAVQEGRQEAPAQVAAAPIAEP
VDQVVESTAAEPVAVEAAGTELVAVEEPVDEAVTSQAAPAQPPADEPAVLAPASVEPSVT
PDTAITASPESEVPAQEPAAVEEVAAEQAPVAASSATNGSTAPLESVLAAAGMELVETRF
PAAPASSTPPVKLGRGRKPAPVVAEEPLQQVETQ
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttgttcaatgcaacgcaccaagaagaactgcgcgttgccattgtcgac
ggtcaaaagcttatcgacctcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaaggcgtaattacccgaatcgaacctggcctggaagcatgcttcgtcagctac
ggcgaagatcgccacggctttctgcccttcaaggaagtggcccgaacttacttcaaggaa
ggcgttgatgttcgtgcggcacgtatccaggacgccctgaccgaaggccaggaactgatc
attcaggtggaaaaggaagagcgcggcaataaaggcgctgccctgaccacctttatttca
ttggccggccgctatctggtcctgatgcccaataacccacggggcggcggtgtatcgcgc
cgcgtcgaaggtgaggatcgccaggaactgcgcgacaccatggaccagttggatatcccg
gcaggcatgagcattattgcccgcaccgcgggtattggccgcaacgtcgaagagctgcag
tgggatctttcctacttgatgcagctttggaatgcgattgacggcgctgcccgcgagaac
ccggctcccatcctgatctatctggaatccagcctcgtaatccgcgcaatccgcgattat
tactcgcccgaaatcggcgaaatcctgatcgacacggacgaaatctacgaacaggccacc
gctttcatgagcgtggtcatgccggacaacgtccagcgcgtcaaaatgtaccgcgacgac
gtcccgctgttttcgcgctttcaaatcgaacaccagatcgagaccgcctattcccgcacg
gtgcaactgccgtcgggcgggtctgtggtcattgaccacaccgaggccctggtcgccatc
gatgtgaactctgcgcgctcgacacgaggcgccgacatcgaagaaaccgctatgcggacc
aaccttgaagccgcagacgaagttgcccgtcagttgcgcctgcgcgacttgggtggcctg
atcgtcatcgatttcatcgacatggaagaggccaagaaccagcgcgccgtcgaacagcgc
ctgcgcgatgctctgcatttcgaccgggctcgtgtccaaatgggcaagatctcgcgcttc
ggcctcatggagctgtcccgtcagcgcctgcgccccgccctgaacgaaggctcgcacatc
acctgcccgcgctgtaacggtacaggcgtagtccgcgatgccgaatccagcgccttgcag
gtgctgcgactgcttcaggaagaagccatgaaggaaggcaccgcctccttgcatgcccag
gtccctgtggacgtggcgaccttcctgctgaacgagaagcgcggcgacatcgccaagatc
gagtcgcgcctgaaggtaaaccttattcttatccccaacaagaatctggaaaccccgcac
caccacatcgagcgcctgcgccacgacgatcctcgcctggaagaaatcaaaaccagcttc
gagctcgtcacgcaacccgagtcgcaactgacctggtcgcccaacaaagcacaggacgcc
gccaagagccgccccgaagcgctggtcaaaagcattacgccatcgcagccggcgcccgtg
tcgtccgtgcccgccgcccgagccattgctgccgccacggcgcaaggcccgggcctgttc
aagcgcctgctcaactggctaactggcggcgatgcagcccccgtggctgtcgagcccgct
aaagaaaccgccggccgttcctcgtcaggtaaccgctccaagggcggtcgcagcggcgac
cgtcgcgagcgcggccatggcgaccgcaacaaccgcaatcgccgtggcgaccgccgccac
gacactgccgaaggcacagcggaagacgcgacgcaaactgccgcagcccgaggacgtcgc
cctgccggcacccatgccgcagccgaacctgcgaacgccacccgaacggcacacccccgc
cacgccgatgccaccgccgagaccgacgaagccaccccatcgagccggggcggacgcagc
cgccgcggccgtggacgcaatcgtcgcgaggaagggcagaccgatacggttgaagtcgat
agcagcgtcgccgttgcagccgccgtcgtcgctacggaaacccttgcagccgccgatacc
acgcaggccgacgccaacgtggcagacagcgatctgatcaccgagaccggtgcagaagga
gatcagcaggatcccgagcgcaaacggcgccgtcgccgtagccgtcgtggccgtcgcagc
gcggaaggcagcaccgaaaacagcacggaagaaagcagcagcgattcggacgataacgaa
gcattcgtgtcgcacgaaactccggctttcaacccgggcgtactgcccaccatcgccagc
ggccagggtcaattccaggaatccctctcggaagccggcgaagtccgtgatacgcaagct
gtgcaggaaggcagacaagaggcaccagcccaggttgctgctgcgcctatcgccgagcca
gtcgaccaggtagtcgagtcaaccgccgctgagccggtcgcggtcgaagcagccggtaca
gaactggtagcggtcgaagagcctgtcgacgaagccgtgaccagccaagctgccccggcc
cagccgccagccgatgagccggcagtccttgcaccagcgtctgtcgaaccgtccgtgact
cctgacactgcgatcacagcaagcccagagtcggaagttccggcacaagagcccgctgcg
gtggaagaagtggcagccgagcaagcacccgttgcagcgtcgtcagcaaccaacggcagc
accgcgccgctggaaagcgtcctggccgccgccggcatggaacttgtcgaaacgcggttc
ccggctgcaccggcttcgagcaccccgccagtgaaactcgggcgtggccgcaagccggct
cccgtcgtcgctgaagaacccttacagcaggtagaaacgcagtaa
DBGET
integrated database retrieval system
