Pollutimonas thiosulfatoxidans: CKA81_06960
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Entry
CKA81_06960 CDS
T05795
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pus
Pollutimonas thiosulfatoxidans
Pathway
pus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKA81_06960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pus03021
]
CKA81_06960
03019 Messenger RNA biogenesis [BR:
pus03019
]
CKA81_06960
Transcription machinery [BR:
pus03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CKA81_06960
Messenger RNA biogenesis [BR:
pus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CKA81_06960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
QAA93604
UniProt:
A0A410GBE1
LinkDB
All DBs
Position
1451260..1452516
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AA seq
418 aa
AA seq
DB search
MHLTELKTQHVSKLLEMAAALEIDNAGRLRKQELMFAIMKRHAKQGEQIFGDGVLEVLPD
GFGFLRSPDTSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GMQPEAIKHRIMFENLTPLHPDEVMTLERDIKSEENITGRILDIFAPIGKGQRALIVASP
KSGKTVMMQHMAHAISANYPDAIMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIGTALVETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPELLQKIWVLRKFIHDMDEIEAMEFIMDKIRATKNNSEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcacagaattaaaaacgcagcacgtctcgaagctgctggaaatggccgccgcg
ctcgaaatcgacaacgccggccgcctgcgcaaacaagaactgatgttcgccatcatgaag
cggcacgccaaacaaggcgagcagatcttcggcgacggcgtacttgaagtgcttcccgac
ggcttcggcttcctgcgttcgcccgacacctcgtatctggcgagcaccgacgatatctac
atatcgccctcgcagatccgacgtttcaatctgcataccggcgactccatcgaaggagag
gtccgcacgccgaaggatggcgagcgttactttgcgctggtcaaggtggataaagtcaat
ggcatgcaaccggaagcgatcaagcaccggatcatgttcgaaaacctcacgccgctgcac
cccgatgaggtcatgacgctcgagcgcgacatcaaaagcgaagaaaacatcaccggacgc
atcctggacatttttgcccccataggcaaaggccagcgcgcccttatcgtcgccagcccg
aaatccggtaaaaccgtcatgatgcagcacatggcacacgccatcagcgccaattatcct
gacgccatcatgatcgtgctgctggtggacgagcgccctgaagaagtcaccgaaatgcaa
cgcacggtgcgcggcgaagtcgtcgcatcgaccttcgacgaacccgccacccgccatgtg
caggtggccgagatggtcatcgagaaagccaagcgcctggtcgaacttaaaaaagacgtc
gtcatcctgctcgattccatcacccgtctggctcgtgcctacaacaccgttgtgcccgcc
tccggcaaggtacttaccggtggtgtcgatgccaatgccctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaatgtggaagaaggcggttcgctgaccatcatcggcacagcgctg
gtcgagaccggcagccgcatggacgaagtcatctacgaagaattcaaaggcaccggcaac
tccgaggttcacctcgaacgccgcctcgccgaaaagcgggtctatccgtcaatcaacctg
aacaaatcgggtacgcggcgcgaagaactgctcatcaaaccagagcttctacaaaagatc
tgggtgcttcgcaagttcatacacgacatggacgaaatcgaagccatggagttcatcatg
gacaagatccgggcaacgaagaacaactccgaattcttcgacatgatgaagaagtaa
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