Pollutimonas thiosulfatoxidans: CKA81_07755
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Entry
CKA81_07755 CDS
T05795
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pus
Pollutimonas thiosulfatoxidans
Brite
KEGG Orthology (KO) [BR:
pus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pus03019
]
CKA81_07755 (hrpA)
Enzymes [BR:
pus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CKA81_07755 (hrpA)
Messenger RNA biogenesis [BR:
pus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CKA81_07755 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
SRP54
SLFN-g3_helicase
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QAA93739
UniProt:
A0A410GBT5
LinkDB
All DBs
Position
complement(1616829..1620707)
Genome browser
AA seq
1292 aa
AA seq
DB search
MQEFVNLSENPHIPGSKRASRPAGAASVRRPPAAARAARALPSVSYPEDLPVSARRDDIA
AAIKANQVIIVCGETGSGKTTQLPKICLELGRGLEKMIGHTQPRRLAATSVAKRIAQELN
TELGDWVGYQIRFNDKTGPNAAIKLMTDGILLAESQRDPLLRRYDTIIIDEAHERSLNID
FLLGFLRQLLPRRPDLKLIITSATIDADRFAQHFGLAGKPAPVIEVSGRLYPVDILYRPV
RADEEPAPGEAAGKRTSSDEERDLIDAVVEGVDECARHGRGDILVFLPGEREIRETVEAL
RKHHPPGTEVLPLYARLSQAEQERIFHPEGSGRRVVLATNVAETSLTVPGIRYVVDSGLA
RVKRYSWRNKVEQLRIEPISQASANQRAGRCGRIGPGVCVRLYDEADFKQRAAFTDPEIL
RSSLASVILRMKALKLDDIEVFPFVDRPSGRAVADGYQQLQELGALDEQQTLTDTGRALA
RLPVDPRLARMILAARDQQCLAEILIIASALSVQDPRDRPMQEREASEAAHAKFGDDKSE
FISYLKLWRWYGEQVEHKGSQRKLVALLRQNFLSPLRLREWRDVHSQLSGLVGEQGWRMN
TSEATYEQTHMALLSGLLGNIGLKSEESGTYQGAREIRFHIHPGSRLVRKAGRWIVAAEL
VETTRLYARCVARIDPVWLEKVGGHLLRRNWSDPRWDRKAGQVVANERATLYGLQVYNGR
RVHFGRIDPAQARELFIRQGLMTGEIDVSLPFLRENRKLILAIEKLEHQTRRPDILVDDS
LIFAFYDQKIPADVYQSATLEKWHKGLSKEESKALLLSRDALMRHDAAGITTEIFPRKVV
WHGVEMALDYHFEPGSVRDGATLTVPLFALNQIDPLRCEWLVPGMLKEKVHLLLKSLPQK
IRRHCVPLPDYAAGFYERWFDRAADPDRGLLEAISADMWEQVKQRPARSDFKPETLPAHL
FMNFKVVDEHGRMLSGGRNLDQLKAEHGKQAQASFQQFAARDDQVAQALSHEQLTEWSFG
PLPEIMEIRRKGQSFVGYPALVDRQTHCDLDVFDDPAQARQRHRAGLRRLFRLGLREQVK
FLEKNLPELTTMSMLYMSLGTQEELRNQIIDCALDQACLAEPWPSDQAAFELRRNEGKSR
LGLLAQEVGRLTKQILMEWSALQKKLPQAKPHAGAYADLQAQQSRLMGKWFLRDTPYQQL
AHYPRYLKAAQVRIDKLRADPARDAKLMAEMAPLVAQYQRAAVALQGNADAQLEAFRWLL
EELRVALFAQELRTPMPVSVKRLQKAWAAMQR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagtttgtcaatttgtcggaaaacccacacataccaggtagcaagcgtgcctcc
aggcccgccggtgctgcttctgttcgtcgcccaccggctgcagcgcgcgcggcccgcgcc
ctgccttcggtaagttacccggaagacctgcccgtcagcgcgcgccgcgacgatatcgct
gcggccatcaaggcgaaccaggtcatcattgtctgtggtgagacgggttcaggcaagacc
acgcagttacccaagatctgcctggaacttgggcgcggcctggaaaaaatgataggccac
acccagccgcgccgtctggcggccacctcagtggccaagcgcatcgcgcaagagctgaac
accgaactgggcgactgggtcggttatcagatccgcttcaacgacaagaccggacccaac
gccgccatcaagctgatgacggacggaatactgcttgccgagtctcagcgcgacccgctg
ctaaggcgctacgacaccatcattattgatgaggcccatgagcgcagcctgaatatcgat
tttctgctgggattcctgcggcaattgctgccgcggcggccggatctgaaattgatcatt
acctcggcaaccatagatgccgaccgctttgcgcagcatttcggcctagccggcaagcct
gccccggtgatcgaggtgtcgggccgcctgtaccccgtggacatactctaccgaccggta
cgtgcggatgaagagccggctccgggcgaggcggctggcaagcggacgtccagtgatgag
gagcgcgatctgattgacgccgtggtcgagggtgtggatgagtgcgcacgccacggacgg
ggcgatatcctggtgttcctccccggcgagcgcgagattcgtgagaccgtcgaggccttg
cgcaaacatcaccccccgggcacagaagtgttgccgctctatgcccgtttgtcccaggct
gagcaagagcgcatttttcatcccgaaggcagcggccgacgcgtggtgctggccaccaac
gtggctgaaacctcgcttacggtgcccggcatacgctacgtggtcgatagcggcctggcg
cgtgtgaagcgctattcgtggcgcaacaaggtggagcagctgcgcatcgagcccatcagc
caggcttcggcgaatcagcgggcggggcgttgtgggcgcatagggccgggcgtatgcgtg
cgcttgtacgacgaggctgatttcaagcagcgggcggcctttaccgaccccgagatattg
cgctcttcgttggcttcggtgatcttgcgcatgaaggcgctcaagctggacgatatcgaa
gtattcccctttgtcgatcgcccctccggccgtgcagtggccgatggctatcagcagttg
caggaactgggcgcgctggacgagcagcagacactgaccgataccggtcgggcgctggcc
cgtttaccggtggatccgcggctggcccgcatgattttggccgcccgcgaccagcaatgc
ctcgccgagatccttatcatcgcctcggcgctgtcggtacaggatccccgcgaccggccg
atgcaggagcgcgaggcttccgaagcggcccatgccaagttcggcgacgataagtccgaa
ttcatctcctacctcaagctatggcgctggtatggcgaacaagtagagcacaaaggctcg
caacgcaagctggttgcgctattacgccagaatttcctctcgccgctgcgcctgcgggaa
tggcgcgatgtccacagtcagctatccggcctggtcggcgaacagggttggcgcatgaac
accagcgaagcgacttatgaacagacccacatggcgctcttgtccggtttgctcggtaat
atcggcttgaagtcggaagaaagcggcacctatcagggcgcgcgggaaatccgctttcat
atccaccccgggtcgcgcctggtgcgcaaggcgggccgttggatcgtcgcggcagaactg
gtcgaaaccacgcgtctgtacgcccgctgcgttgcccgcatcgacccggtctggctggaa
aaagtgggtggacatttgctgcgccgtaactggtccgacccgaggtgggaccggaaagcc
ggccaggtcgttgccaatgaaagggcgacgctctatggcttgcaggtctacaacggcagg
cgtgtccactttggtcggatagatccggcgcaagcacgggaactgttcatccggcaggga
ctgatgacgggagagatcgatgtctccttgcccttcctgcgggaaaaccgaaaactgatt
ctggccatcgagaaactcgagcaccagacgcggcggccggacattctggtggatgacagc
ctgattttcgccttctacgatcagaaaattcctgcggatgtctaccagagcgcgaccctg
gagaaatggcataaaggcctgtccaaggaagaatcaaaggccttgttgctgagtcgcgat
gcgctgatgcggcatgatgccgccggcatcaccaccgagatattcccgcgcaaggtcgtg
tggcatggcgtcgagatggcgctcgattatcatttcgaacccggttccgtgcgagacggc
gcgaccttgaccgtgcctctgtttgctttgaaccaaatcgaccccttgcgctgcgagtgg
ctggtgcccggcatgctgaaggaaaaggttcatctgctgcttaaatccttgcctcagaaa
atacggcgccattgtgtgcctttgcccgattatgcagcgggtttttatgagcgttggttc
gacagggccgccgatccggaccggggcctgctggaggcgatcagcgccgacatgtgggag
caagtgaagcagcgtccggcccgcagtgatttcaagcccgaaaccttgccggcccatttg
ttcatgaacttcaaagtggtggacgagcatgggcgcatgctttcgggcgggcgcaacctg
gatcaactcaaggcagagcacggcaagcaagcgcaggcttcctttcagcagtttgcggcc
cgggacgaccaggttgcccaggccctgtctcatgagcagttgaccgagtggtcgtttggc
ccgctacccgagatcatggaaatacgccgcaagggacaatcgtttgtgggctatcccgcg
ctggttgacaggcaaacccattgcgatctggacgtatttgatgatccggcgcaggctcgc
caacggcatcgggcaggcttgcgccgcctgtttcgcttgggactgcgcgagcaggtgaag
ttccttgaaaagaatctgcctgagctgaccacgatgagcatgctttatatgtcgctgggc
acacaggaagagctccgcaatcagattattgattgcgcactggatcaggcctgccttgcc
gagccctggccttcggaccaggctgctttcgaattgagacgcaatgagggcaagtcgcgc
ctgggccttctggcgcaagaagttggccgcctgaccaagcagatactcatggagtggtcg
gcgttgcagaagaagctgccgcaggccaagccgcatgccggcgcatacgccgatttgcag
gcgcagcagtcgcgcctgatgggaaaatggtttctgcgcgacacaccctatcagcaactg
gcacactacccacgctacctgaaggcggcccaggtgcgtatagacaagttgcgtgccgat
cctgcgcgtgatgccaagctgatggccgagatggcgccgttggtggctcaataccagcgc
gccgcggtggccctgcagggcaatgccgatgcgcaactggaggcgtttcgatggctgctc
gaggagttgcgtgtggctctgttcgcccaggaactgcgcacgcctatgccggtatcggta
aagcgcctgcaaaaggcctgggcggcaatgcagcgctag
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integrated database retrieval system
