Pollutimonas thiosulfatoxidans: CKA81_14510
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Entry
CKA81_14510 CDS
T05795
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pus
Pollutimonas thiosulfatoxidans
Pathway
pus03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKA81_14510 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pus03021
]
CKA81_14510 (rpoC)
03400 DNA repair and recombination proteins [BR:
pus03400
]
CKA81_14510 (rpoC)
Enzymes [BR:
pus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKA81_14510 (rpoC)
Transcription machinery [BR:
pus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKA81_14510 (rpoC)
DNA repair and recombination proteins [BR:
pus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKA81_14510 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
QAA94928
UniProt:
A0A410GF65
LinkDB
All DBs
Position
2982007..2986254
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKVRSWSYGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMAHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFHALM
GAEAVRELLRTIDIDRDVETLRAELKATSSDAKIKKISKRLKVLEGFQKSGIKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESHEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGMFFTDVSEVQRAYDNR
EVELQSRVTVRLNEYEKDAEGEWQPVLKRFETTVGRALLSEILPKGLPFSVLNRPLKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMSDMLIPSVKEDILTQASKE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDRVGKAMMEQLATEPVVDRHGENVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEADCGTSRGYSMKALVEGGEVIEPLRDRIL
GRVTAIDIVNPDTQETALEAGTLLDEDLVEFIDSIGVDEVKVRTPLTCETRHGLCGRCYG
RDLGRGYLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAMASSVETKSSGTIGF
AIGLRYVTNAKGERVAISRSGEIIIFDDARRERERHKIPYGATIAVGDGDVVKAGQRLAN
WDPLTRPIVSEYAGVVRFENIEEGVTVARQLDEVTGLSTLVVITPKTRGGKIMMRPQIKL
IGESGEEVRIAGTDHMVNISFPVGALITVRDGQKVSVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIERLASYVVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNITNPGDTSFITGEQVERSELLNENDRMEADGKLPATYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGMAYHLARKDKEAHEAAERQ
AARAMANPFEDTPPAEVAEAHEGPASDASEGAAEE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgatctatttaaacaagtctcgcaagacgagcaattcgatgccatc
aagatcggcatcgcatcgcctgagaaagtgcggtcgtggtcctatggcgaagtacgcaag
ccagaaaccatcaactaccgcaccttcaagcccgagcgtgacggcctgttctgcgccaag
atattcggtcccatcaaggattacgaatgcctttgcggcaagtacaagcgcctgaagcat
cgcggcgtgatctgcgaaaaatgcggtgtcgaagtcaccgttgccaaggtgcgtcgcgag
cgcatggcccatatcgaactggccagcccggttgcgcacatctggttcctcaagagcctg
ccgtcgcgcctgggcatggtgctcgatatgacgctgcgcgatatcgaacgcgtgctgtat
tttgaagcatggtgcgtaatcgaaccgggcatgacgccgctcaagcgcggccagatcatg
tccgacgacgacttcctggccaagacggaagaatacggcgacgacttccacgccctgatg
ggtgcggaagccgtccgcgagctgctgcgcaccatcgacatcgatcgcgatgtcgagacc
ctgcgcgccgaactcaaggccacctcgtccgacgccaagatcaaaaaaatctccaagcgc
ctgaaagtgctggaaggtttccagaagtcgggcatcaagcccgagtggatggtcatggaa
gtattgccagtgctgccaccggacttgcgtccgctggtgccgctggacggcggccgtttc
gccacgtccgacctgaacgatctctatcgtcgcgtcatcaaccgcaacaaccgcctgaag
cgcctgcttgaactgaaggcgccggacatcatcctgcgcaacgaaaagcgcatgttgcaa
gagtccgtcgattcgctgctggacaacggtcgtcgtggcaaggccatgacgggcgccaac
aagcgccagctcaagtccctggcagacatgatcaagggcaagagcggtcgtttccgtcaa
aacctgctgggcaagcgggtcgactactccggtcgttcagtcattgtggtgggtccgcag
ctcaagctgcatcagtgcggcctgcccaagctgatggcgctcgagctcttcaagcccttc
attttcaatcgtcttgaaatgatgggcctggctacgaccatcaaggcggccaagaagctg
gtcgaaagccacgagccagtcgtttgggacattcttgaagaagtcatccgcgaacacccc
gtcatgctcaaccgtgcgcctacgctgcaccgtctgggcatccaggcgttcgagccggta
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggctttcaacgccgac
ttcgacggcgaccagatggctgttcacgtgccgctgtcgctggaagcacagctggaagcc
cgcacgctgatgctggcttccaacaacgtgctgttcccggccaacggcgaaccttccatc
gtgccgtcgcaagacatcgtgctgggcctgtactacaccacgcgcgaacgcatcaacggc
aagggcgaaggcatgttcttcacggatgtgtccgaggtgcaacgcgcctacgacaaccgt
gaagtcgagctgcaaagccgcgttacggtgcgcctgaacgaatacgagaaggatgccgaa
ggcgaatggcaaccggtgctcaagcgttttgaaacgacggtcggacgtgccttgctgtcc
gagatcctgcccaagggcctgccgttctcggtgctgaaccgcccgctcaagaagaaagaa
atttcgcgcctgatcaaccagtcgttccgtcgttgcggtttgcgtgccaccgtcattttt
gccgacaagctgatgcagtccggtttccgcctcgctacgcgcggcggtatctcgattgcc
atgagcgacatgctcatcccgtcggtcaaggaagacatcctgacgcaggccagcaaggaa
gtcaaagagatcgacaagcaatactcgtcgggcctggtaacgtcgcaagagcgttacaac
aacgtggtcgacatctggggcaaggcgggcgatcgagtcggcaaggccatgatggaacag
ttggctaccgaacctgtcgtagaccgtcatggcgaaaacgtccgtcaagagtcgttcaac
tccatctacatgatggccgactctggcgcccgtggttcggccgcccagatccggcagctt
gccggtatgcgcggactgatggccaagccggatggctcgattatcgaaacccccattacc
gccaacttccgcgaggggctgaacgtactgcagtacttcatctcgactcacggtgcacgt
aaaggcctggccgatacggcactgaagacggcaaactcgggatacctcacgcgtcgcctg
gtcgacgtgacgcaggatctggtcatcaccgaagcagattgcggcaccagccgcggctac
tccatgaaagccctggtcgagggcggtgaagtcatcgagcccttgcgtgaccgcatcctg
ggccgcgttacggcgatcgacatcgtcaatcccgacacgcaggaaaccgccctggaagct
ggcacgctgctggacgaagatctggtcgagttcatcgacagcatcggcgtggacgaagtc
aaggtccgcacgccgcttacctgcgaaacccgacacgggctttgcggccgttgctatggc
cgtgacctgggtcgcggctatctggtcaaccgaggcgaggctgtcggcgtcattgccgca
cagtccatcggtgagccgggcacgcagcttacgatgcgtaccttccacatcggtggtgct
gcatcgcgtgccgccatggccagttccgtcgaaaccaaatcgtcaggcactatcggtttt
gccattgggttgcgctacgtcaccaacgccaagggcgaacgcgtggcgatctcccgctct
ggcgagatcatcatttttgatgatgcccgccgcgaacgcgaacgccacaagatcccctac
ggtgccaccattgccgtgggcgacggtgacgtcgtcaaggctggccagcggctggccaac
tgggatcctctcacccgtcctatcgtgtccgagtacgccggtgtcgtccgtttcgagaac
atcgaagagggcgtaacggtggccaggcagctggacgaagtaaccggcttgtccaccctg
gtcgtcatcacgcccaagacgcgtggcggcaagatcatgatgcgtccgcagatcaaactg
atcggcgagtccggtgaagaggtccgtatcgccggcaccgaccacatggtcaatatctcg
ttcccggtcggtgcgctgatcacggtgcgcgatggccagaaggtatcggtcggtgaagtt
ctggcgcgtattcctcaagaatcgcaaaagacgcgcgacattaccggtggtctgcctcgt
gtggccgagttgttcgaagcccgttccccgaaagatgccggcatgcttgccgatgtcacg
ggtacggtttcgttcggcaaggacaccaagggcaagcagcgcctggtcattaccgacctg
gaaggcgtcagccacgagttcctgattcccaaggaaaaacaggtgctggtgcacgacggc
caggtagtgaacaagggcgagatgatcgtcgacggccccgccgacccgcacgacatcctg
cgtctgcaaggtatcgagcgtttggccagctatgtcgtcaatgaagtgcaggacgtgtat
cgtctgcaaggcgtaaagatcaacgacaagcacatcgaagtgattgttcgtcagatgctg
cgccgggtgaacatcaccaatccgggcgataccagcttcattacgggcgagcaggtcgag
cgttccgagttgctgaacgaaaacgaccgcatggaagctgacggcaagttgccggcaacc
tacgacaacgtactgctgggcatcaccaaggcatcgctgtcgaccgactcgttcatctcc
gccgcttccttccaggaaacgacccgggtgttgaccgaagctgccatcatgggcaagcgg
gacgacttgcgtggcctgaaagagaacgtcattgtgggccgactgataccagccggtacc
ggcatggcttatcacttggcgcgcaaagacaaagaggctcacgaagctgccgagcgtcaa
gcagcacgcgccatggccaacccgttcgaagacacgccgcctgctgaagttgcagaggcg
catgaaggcccggcgtccgacgcaagtgaaggcgctgccgaagagtaa
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