Parachlamydia acanthamoebae: PUV_19800
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Entry
PUV_19800 CDS
T01552
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
puv
Parachlamydia acanthamoebae
Pathway
puv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
puv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PUV_19800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
puv03021
]
PUV_19800 (rpoC)
03400 DNA repair and recombination proteins [BR:
puv03400
]
PUV_19800 (rpoC)
Enzymes [BR:
puv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PUV_19800 (rpoC)
Transcription machinery [BR:
puv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PUV_19800 (rpoC)
DNA repair and recombination proteins [BR:
puv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PUV_19800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CCB86930
UniProt:
F8L111
LinkDB
All DBs
Position
complement(2187227..2191372)
Genome browser
AA seq
1381 aa
AA seq
DB search
MSENNQQDGQFDKLTIKIASDEVIRNQWSHGEIKKPETINYRTFKPEKGGLFCEKIFGPT
RDWECACGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIDLAVPVVHIWFFKTMPSRIG
NVLGMSSTDLERIIYYEEHVVVDPGQSDLEKKQLLTDAELRQAQEKWGRDAFVTMMGGEA
IRELLKSEDLHGLLVDLKEKLRKSKSLQARMKLAKRLKIVESFLSSDNRPEWMVMSCVPV
IPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILKLKTPEVIVRNEKRMLQESVD
ALFDNGRHGHPVMGAGNRPLKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIIVGPELKFN
QCGLPKLMALELFEPFIVKRLKDLGYVYTIRSAKKMIQRHAPEVWDVLEDIIKGHPVLLN
RAPTLHRLGIQAFEPVLIEGKAIRIHPLVCSAFNADFDGDQMAVYVPLSVEAQLEAKLLM
MAPDNIFLPSSGRPAAVPSQDMTLGLYYLMCDPLYIPEDHGYKTRVFRDSQEVLMALASS
EARQDRKGAQGSDQYGLHIHEKIRLRTENGIIETTPGRVLFNTIVPPELGFQNYSMPKKK
MGDLVMRCYKKVGLEATVRFLDNLKNLGFLEATKAALSMGVCDVRIPANKEKILEEAHQR
VALVKKQYEDGIITDGERQSKTISIWTEVSETLSEELFKLISEINDSQLNPLFMMMDSGA
RGNKSQIKQLGALRGLMAKPSGAIIESPITSNFREGLTVHEYYISSHGARKGLADTALKT
ADSGYLTRRLVDVASDVIITEEDCGTLNGIEVSPIKQGQEELLPLKDRIFGRTVCDDVYL
PGDSTKLLAKIGDTLTILQAEAIDDSGIESVKIRSVLTCETRRGVCAKCYGVNLANGRQV
SMGEAVGIIAAQSIGEPGTQLTMRTFHLGGIASASLSPEIVSEFEGIVVYTDLRTVQNDD
GHWVVLNKNGSLNIVRDEGRSLDEYKKLLSTKSIESLQTFTLELGTRILVADGSKVKPHT
KIAEWEQHNIPIICDRPGFVKYEDLVEGISTERDTNKQTGQVELIVKQHRGELHPQIVIY
ADQECKELIGTYPIPSGAIISVVEGQFATAGTLLARLPRGALKTKDITGGLPRVAELFEA
RKPKDSAEIAKMNGVVDFRLHKNKRILVVRDESTGMEEEHMIPQTKHLIVQRGDHVIKGQ
QLTDGVVIPHEILEICGVRELQKYLVNQVQEVYRLQGVDINDKHIEIIVRQMLKKVRIVD
PGDTSLLYGEEVDKKDFENENMKVAKEGGKPAQAAPVLLGITKASLGTESFISAASFQDT
TRVLTEAACAGKTDYLLGFKENVIMGHIIPAGTGFERHKRVKKFVDKDHEEELVFDFESV
F
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaataatcagcaagacgggcaatttgacaagctgacaattaagattgcctcc
gatgaggtcattcggaatcaatggtctcacggcgaaattaaaaagcctgaaacaattaac
tatagaacttttaaacctgagaaaggtggtcttttttgtgaaaagatttttggacctact
cgcgactgggaatgcgcgtgtggtaagtacaaaaaaattaagcacaaagggattgtttgc
gatcgttgtggtgtagaagtgactctatcaaaagtgcgccgcgaaagaatggcacacatc
gatttagcagtacctgttgttcatatttggttcttcaaaacaatgccttcacgtattggt
aacgttttgggaatgtcttctacagatctcgagcgcattatttattacgaagagcatgtg
gttgtcgatccaggtcagtcagatttggagaaaaaacaactcttaacagatgctgaactt
agacaagcgcaagagaaatggggaagagacgcttttgtgaccatgatgggtggtgaagcg
attcgtgaattactgaaatctgaagatttgcatggtctcctcgtcgatttgaaagagaaa
ttgcgtaaatccaaatctctacaagctagaatgaagctagcaaaacgtttgaaaattgtg
gaaagctttctttcctcagacaacagacccgaatggatggtgatgtcctgtgttcccgtg
attccacccgaactccgtcctctcgttccattagatggtggtcgttttgctacttctgac
ttaaacgatctgtatagacgtgtcatcaatagaaataaccgtttgaaagcaattttaaag
cttaaaacaccagaagttattgttcgcaacgaaaagcgaatgctgcaagaatctgtagat
gcgttgtttgacaatggtcgccatggtcatccagtaatgggtgctggaaaccgtcctcta
aaatctctttctgaaatgttgaaagggaagcaagggcgtttccgtcaaaacttgttgggt
aaacgtgtagactactctggtcgttcggttattattgttggtccagaattgaagttcaat
cagtgcggtttgccaaaattgatggctcttgaactattcgaaccttttattgttaaacgt
ttgaaagatttaggatatgtttatacaatccgttcagctaaaaaaatgattcaaagacat
gcaccagaagtttgggacgtgttagaagacattattaaaggtcaccctgtactgttgaac
cgtgcacctactttgcaccgtcttggtatccaggcgtttgaacctgttttaattgaaggt
aaagcgattcgtattcaccctctcgtttgctctgcgtttaacgctgacttcgacggtgac
cagatggctgtttacgttcctctttctgtagaagctcagctagaagctaagttgctcatg
atggctcctgataacatcttcttgccatcctctggacgtccagctgctgttccttctcag
gatatgactttgggcctttattacttaatgtgcgatcctctttacattccagaagatcac
ggatataaaacacgtgttttccgcgattctcaagaagtattgatggcattggcatcttct
gaagctcgtcaagaccgcaaaggtgctcaaggttcagatcagtatggtctacatattcat
gagaaaattaggctgcgtacagaaaatggaattattgaaacaacaccaggtcgcgtattg
tttaatacaattgttcctcctgagcttggtttccaaaactatagtatgcccaaaaagaaa
atgggcgacttggtcatgcgttgctataaaaaagtgggcttggaagcgacagttcgcttc
ttggataacttgaaaaaccttggattcttagaagcaactaaagcggctctttcgatgggt
gtttgcgatgtcagaattcctgcgaataaagagaagattttagaggaagcccaccaacgt
gttgctcttgttaaaaagcaatatgaagacggtattattacagatggtgagcgtcaatct
aagacaattagtatttggacagaagtttctgaaacactatccgaggaactctttaagctg
attagtgaaattaacgactcccagttaaatccattatttatgatgatggactctggtgcg
cggggtaacaaatcccagattaaacagttaggtgctttgcgtggattgatggcgaaacct
tctggtgcgattatcgaatctccaattacctctaactttagagaaggtttgactgtacac
gaatactacatctcttctcacggtgcgcgtaaaggtcttgcggatactgcgttgaaaacg
gcggactccggttacttgacacgtcgtcttgttgacgttgcttctgacgtgattatcaca
gaagaagattgtggaactttgaatggaattgaagtttccccaattaagcaaggtcaagaa
gaactcctcccgttgaaggatcgtatcttcggccgaactgtttgtgatgacgtttatctt
ccaggagatagcacaaagcttcttgctaagataggcgatacattgactattctgcaagct
gaagcaattgacgactctggtattgaaagcgttaaaattcgctcagtgctcacttgcgaa
actagacgtggtgtctgtgcgaaatgttacggtgttaacctcgcgaatggacgtcaggtc
agcatgggtgaagctgtcggtatcatcgcagctcagtccattggtgaacctggaacgcag
ttgacgatgagaacgttccacttgggtggtatcgcttctgcaagcttaagtcctgagatt
gtatccgaatttgaagggattgttgtttatacagacctaagaacggtgcaaaatgatgat
ggccattgggttgttcttaataagaatggatccttgaacattgttagagacgaaggccga
tccttagatgagtataaaaagctactctctacaaaatcgattgagtcacttcaaaccttt
acgttggaattgggaacacgtatccttgttgctgatggaagtaaagttaagcctcatacg
aagattgcagagtgggaacaacacaatatcccaattatttgcgatcgcccaggttttgtg
aagtacgaagatctcgtagaagggatctcaacagagcgtgatacaaacaagcaaactggt
caggtagagctaattgtaaaacaacaccgtggcgaattgcatccacagattgtgatttat
gcggaccaggaatgcaaagagctaattggtacttacccaattccatccggagcgattata
tcggtggtagaaggtcagttcgcaacggcaggtacattgctagcacgtcttcctcgcgga
gctttgaaaacaaaggatattacggggggtcttcctcgtgtagctgagttgttcgaagca
cgtaagccaaaagattctgctgagattgccaaaatgaacggggttgttgacttccgtctc
cacaagaataagcgtattcttgtagtaagagatgagtcaacaggtatggaagaagaacat
atgattcctcagactaaacacttaatcgttcaacgtggcgaccatgtcattaaaggtcag
cagttaacagatggtgtggtcattccacatgaaattttggaaatttgcggtgtacgtgag
cttcaaaaatacttggttaatcaggttcaagaagtttatcgcctacagggggtagacatt
aacgacaagcacattgaaattatcgtgcgtcagatgttgaaaaaagtacgtattgtcgat
ccaggtgatacaagcttgctctacggtgaagaagtggataagaaagactttgagaacgag
aatatgaaagttgcaaaagaaggtggaaaaccagctcaagcagctcctgtcttgttgggt
attacaaaagcttccttaggaacagaatccttcatctcagcagcatccttccaagataca
acacgtgtcttgacagaagccgcttgtgcaggaaaaacagactacctgttagggttcaaa
gaaaacgtcattatgggacatatcattcctgcgggaacaggtttcgaacggcataagcgc
gtgaagaagtttgttgataaagaccatgaagaagagttagtctttgattttgaaagcgta
ttttaa
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