Parachlamydia acanthamoebae: PUV_24460
Help
Entry
PUV_24460 CDS
T01552
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
puv
Parachlamydia acanthamoebae
Pathway
puv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
puv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PUV_24460 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
puv03021
]
PUV_24460 (rpoD)
Transcription machinery [BR:
puv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PUV_24460 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
CCB87396
UniProt:
F8L265
LinkDB
All DBs
Position
2669410..2671050
Genome browser
AA seq
546 aa
AA seq
DB search
MSKVNFSQTFSQHHQQKVDELVSLAKEQGYITYEEINEILPMTFDNADQIDQVLIFLSGM
DVQVLNQAEVERQKEKKKEAKEMEGLPKRSEGSPDDPVRMYLKEMGSVPLLSREEEVEIS
KRIEKAQIQIERIIMRFRYSTAEAISIASYLIQGKERFDKCITEKEVVNKQEFLHLLPKL
CDLLKDEDAILEQLLLKPLSETLEEDIEKCRIRTQAYLRRLHCRHNVIEDFGEVILRAYD
RFLALEKDINELKPRAERNKYAAAKLNAAKRKLKKRELAAGRSLEDFKKDVRMLQRWMDK
SQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYA
TWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGREPSPEELANELGITA
ERVREIYKIAQHPISLQAEVGDGGESQFGDFLEDTGADSPAEATGYSILKDKMNEVLATL
TDRERKVLIQRFGLLDGKPKTLEEVGVEFNVTRERIRQIEAKALRKMRHPTRSKQLKAFL
DLLDVE
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagtaaatttttcacaaacattctcccagcatcaccaacaaaaagttgatgaa
cttgtctcgcttgcaaaagaacagggatacatcacctacgaggaaattaacgaaatcctc
ccaatgacttttgacaacgcagatcaaattgaccaagtcctgattttcttaagcgggatg
gatgttcaagttctgaatcaagcggaagtcgagaggcaaaaagagaagaagaaagaagcc
aaagaaatggaagggcttcctaagcgatctgaaggttccccggacgatcctgttagaatg
tatttaaaagaaatgggatctgttcctctcctcagccgagaagaagaagtggagatttcc
aaacggatcgaaaaagcgcaaattcaaatcgaacgaatcatcatgcgtttccgctattcc
acagccgaagccatttcgattgcctcttaccttattcaaggaaaagagcgctttgataaa
tgcattacagaaaaagaagtggtcaataagcaagaatttttgcacctccttccaaagctt
tgtgatcttttaaaagatgaagatgccattctagaacagcttttactgaagccactctca
gaaacattggaagaagacattgaaaaatgccgaatccgcacacaagcctatttacgtaga
ctccactgtcgacataacgtcattgaagactttggtgaagtgattttacgggcttacgac
cgtttcttagcccttgaaaaagatatcaatgagcttaaaccacgtgctgagcgtaataaa
tatgccgctgcaaaattgaatgcagccaagcgcaagctcaaaaaacgggaattagcggcg
ggacgttctttagaagatttcaaaaaagatgtgcgcatgcttcaacgttggatggataaa
agccaagaagcaaaaagagaaatggttgaatccaacctgcgcttagtcatttcgatcgcc
aagaaatacacaaaccgcggcctatccttccttgatttaattcaagaaggcaatatgggt
ctgatgaaagcggttgaaaagtttgaatatcgtcgcggttacaaattttcaacttatgcg
acttggtggattcgacaagccgttacacgtgccatcgcagaccaagcaagaacaatccgt
attccggtgcacatgatcgagacgatcaacaaggtcttgcgcggcgcaaagaaactaatg
atggaaactggtcgtgaaccaagccctgaagaactcgctaatgaacttggcattacagct
gaacgtgtacgtgaaatctacaaaattgcccaacacccgatctcgctacaagctgaagta
ggtgatggcggtgaaagccaatttggggactttctagaagatacaggagcagactcaccc
gcggaagcaactggctattccattttgaaagacaaaatgaatgaagtattagccacattg
actgatcgcgaacgcaaagttttaattcaacgttttggccttttagatggcaaacccaag
actttggaagaagtgggcgttgaatttaatgtracccgtgaacgtattcgtcaaattgag
gctaaagccctgcgaaaaatgcgccacccaacgcgttctaaacaattgaaagcgttccta
gatttgttagatgtcgaataa
DBGET
integrated database retrieval system
