Pantoea vagans C9-1: Pvag_0334
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Entry
Pvag_0334 CDS
T01326
Symbol
sbcC
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pva
Pantoea vagans C9-1
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pva03400
]
Pvag_0334 (sbcC)
DNA repair and recombination proteins [BR:
pva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pvag_0334 (sbcC)
Archaeal homologous recombinant proteins
Pvag_0334 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
nSTAND3
ABC_tran
MobB
AAA_21
cobW
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADO08547
LinkDB
All DBs
Position
complement(362013..365687)
Genome browser
AA seq
1224 aa
AA seq
DB search
MKILTLRFKNLNALRGEWFIDFRAEPFASNGLFAITGATGAGKTTLLDAICLALYHQTPR
LGAISQSQNALMTRDCAECLAEVEFEIKGEAWRAFWSQNRARGTADGKLQAPRVELARCD
DNTIVADKVGDKLKLIETLSGLDFERFTRSMMLSQGQFAAFLNAKASERAELLEELTGTE
IYGLISAAIYERHKEAKTQLDLLRSQAGAMALLDSDARDALQQQFSDLTRAEQQLSADYQ
QAQQQQQWQQQAQQLQQESAQAEAALQQAQAASQAAETDRQRLARSEPAEKLRIKLQQRD
TLRSEQQQAESRYQQLTAAQQQAQNQQQQHQQNYAAAQTARQLAQQEQQQQENLLTEQVL
PLDQHITTLQQQLAEQQQENARQQQHADQTQASLMQQKQQVAAWQQAIAEQHQLREQLAD
LAHWGASLPVWQENFALLAQREATLAGLTQQREQQQQQIDAQQAKQQQEAQQALPRQLSE
QQARQALSQAEQVLTSLQEQHPPAALRQALSQLQNSRPARQQLLLLSTQWQPLHQQLGQR
QQRLSALEKAHQQSEAELQSLRETWKREKQQLDDVEKICALEQQIVDLSDYRARLTADQP
CPLCGSCTHPAVEAYSTLEVSANQQRRAALQQQTEALREAGTAKNEQLKQSVVQQQALRD
EIAGMQQQLEQLEQQWQALSGELALTIPLADREALATWQQQQSDRESQLEQQRQAQEAAE
QARQAAKDHHLQQLQAWQQHQQAEQLAQQSLTSLQQALDALQQRQQQEQQAWEQLQSRLE
QQFSAHHLALPDAADRDAWLAEQQRRWQRWQESEQLLANLQPKLLKGETQLTALQQQAEQ
EQQQLATRQQQQQQSQTQLSEMRRARLALFGDRDVAHARQLLQARVQHTDEQLAQQLTAL
QQAQAEVSRLQGELSGLENQRQTLSGKLAEAESVLQQALESAGFTDEASLRAALLDEQTA
LQLRQQLQQLDQQCQQQQARLADLQQRLSVHQQAKPDAMPESAEALAQQLEQLRLALRDN
ASQQGQIQQQLHSDASLRARQQSLMTQIEQDGVVLAQWSLLNDLIGSASGDKFRRFAQGL
TLDHLVALANRQLDRLHGRYLLQRRAQDLLELDVVDTWQADAARDTRTLSGGESFLVSLA
LALALSDLVSHKTRIESLFLDEGFGTLDAQTLDTALDALDALNASGKTIGVISHVEAMKE
RIPVQIKVRKMNGLGYSQLELPQG
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaagatccttacgctacggtttaaaaacctcaatgccctgcgcggtgaatggttcatc
gacttccgcgccgagccttttgccagcaacggcctgtttgcgataaccggggccaccggg
gcgggtaaaaccacgctgctggacgccatctgcctggcgctctatcaccagacaccgcgc
ctgggcgcgatttcccagagccagaatgcgctgatgacccgcgactgcgcagaatgtctg
gctgaggtcgagtttgagatcaaaggtgaagcctggcgcgccttctggagccagaaccgc
gcgcgcggcaccgctgacggcaagctacaggcgccgcgcgttgagctggcgcgctgtgac
gacaacaccattgttgccgataaggtcggtgacaagctgaagctgatcgaaaccctgtca
ggtcttgatttcgaacgcttcacccgctcaatgatgctgtcacagggacaattcgccgcc
tttctcaacgcgaaagccagtgaacgcgccgaactgctggaggagctgaccggcaccgaa
atttacggcctgatttccgcagccatctacgagcgtcataaagaggcgaaaacccagctg
gatctgctgcgcagccaggcgggagcgatggcgctgctggatagcgacgcccgcgacgcg
ctgcaacagcagtttagcgatctgaccagggctgaacagcagctcagcgcggattatcag
caggcgcagcaacagcagcagtggcagcaacaggcacagcagttacagcaggagagtgcg
caggctgaagcggcgctacagcaggcacaggccgcgtcacaggcggctgaaaccgaccgc
cagcggctggctcgcagcgaaccggctgaaaaactgaggattaaactgcagcagcgtgac
acattgcgcagtgaacagcagcaggctgagagccgctatcagcagcttaccgcggcgcag
cagcaggcgcagaaccagcagcagcagcatcagcagaattatgcggccgctcagaccgcc
cgccagctggcgcagcaggaacagcagcagcaggagaacctgctgacggaacaggtgctg
ccgctggatcagcacatcacgacgctgcagcaacagcttgcagagcagcagcaggaaaat
gcccggcagcagcagcatgccgaccagacccaggccagcctgatgcagcagaagcagcag
gtcgcggcctggcagcaggcgattgccgaacagcatcagttacgcgagcagctggccgat
ctggcgcactggggcgcttcgctgccggtatggcaggagaactttgccctgctggcacag
cgtgaggcgacactggcgggactgacgcaacagcgcgaacagcagcagcaacagatcgat
gcgcaacaggcgaaacagcaacaagaggcacaacaggcactgccgcgccagttgtcagag
caacaggcccgccaggcgctgtcgcaggcggagcaggtactcacttcgcttcaggagcag
catccgcctgccgcactgcggcaggcattaagccagttgcagaacagccgtccggcgcgt
cagcaactgctgctgctctcaacgcagtggcagccgctgcaccagcagctgggccagcgc
cagcaaaggctgagcgcgctggaaaaagcgcatcagcagagtgaagcggaactccagagc
ctgcgcgagacgtggaaacgcgaaaaacagcagctggatgatgtcgaaaaaatctgcgcg
ctggagcagcagattgtcgacctcagcgattaccgcgcccggctcaccgccgatcagccc
tgcccgctgtgcggctcctgcacccatcccgccgttgaggcctacagcacactggaagtg
agtgctaaccagcagcgccgggctgcgctgcagcagcaaaccgaggcactgcgtgaagcg
ggcacggcaaaaaatgaacagctgaagcagtcagtagtgcagcagcaggccctgcgcgat
gaaatcgccgggatgcagcaacagcttgagcagcttgagcagcaatggcaggcgctgagc
ggtgagctggcacttaccatcccgcttgccgatcgcgaggccttagccacgtggcagcag
cagcaaagcgaccgtgaaagtcagcttgagcagcagcgacaggctcaggaggccgctgaa
caggcgcgtcaggctgcgaaagatcaccatcttcagcagctacaggcctggcagcagcac
cagcaggccgaacagctggcgcagcagtcgctgaccagcctgcaacaggcactggatgcg
ctgcaacagcgtcagcagcaggaacagcaggcctgggagcagttgcagagccgtctggag
cagcagttcagcgcgcaccatcttgccctgcccgatgctgccgatcgcgatgcgtggctg
gcggagcaacagcggcgctggcagcgctggcaggaaagtgagcagttgctcgctaacctg
cagccgaagctgttaaaaggggaaacccagctcactgccctgcaacaacaggcagagcag
gaacagcagcagctcgccacccgtcagcagcagcagcagcagagccagacgcagctcagc
gaaatgcgtcgtgcccgtctggcgctgtttggcgatcgcgatgtcgcccacgcccgtcag
ctgctgcaggcccgcgttcagcacactgatgaacagctggcacagcagctcaccgccctg
caacaggcgcaggccgaggtcagtcgcctgcagggtgagctgtcggggctggaaaatcag
cgtcagacgctcagcggcaaactggcagaggcggaaagcgtgctgcagcaggcactggag
agcgccggatttaccgatgaagccagcctgcgcgcggcgctgctggatgagcagaccgcg
ctgcaactgcgtcagcaactgcagcaactcgatcagcaatgccagcagcagcaggcgcga
ctagcggatctgcagcagcggctcagcgttcatcagcaggcgaaacccgatgcgatgccg
gaatccgccgaagcactggcgcagcagctggagcagttacggctggccctgcgcgacaac
gccagccagcagggtcagattcagcagcagctgcacagcgacgccagcctccgcgcccga
caacagagcctgatgacgcagattgaacaggatggtgtggtgctggcgcagtggagcctg
ctcaacgatctgatcggctccgctagcggcgataaattccggcgcttcgcccaggggtta
acgctggatcatctggtagcgcttgccaaccgtcagctcgatcggctgcatggccgttat
ctgctgcagcgccgggcgcaggatctgctggagctggatgtcgtcgatacctggcaggcc
gacgcggctcgcgatacccgcacgttgtcaggtggcgagagtttcctggtcagtctggcg
ctggcgctggcgttatcggatctggtcagccacaaaacgcgcatcgaatcgctgtttctg
gatgaggggttcggcacgctggatgcccagacgctggacaccgcgctggatgccctggac
gcgctgaacgccagcggcaaaaccatcggggtgatcagccacgtggaagcgatgaaagag
cgtatcccggtgcagattaaagtgcgcaagatgaatggattagggtacagccagctggaa
ttgccgcagggataa
DBGET
integrated database retrieval system
