Pantoea vagans C9-1: Pvag_0380
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Entry
Pvag_0380 CDS
T01326
Symbol
hupB
Name
(GenBank) Integration host factor subunit alpha (IHF-alpha)
KO
K03530
DNA-binding protein HU-beta
Organism
pva
Pantoea vagans C9-1
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pva03032
]
Pvag_0380 (hupB)
03036 Chromosome and associated proteins [BR:
pva03036
]
Pvag_0380 (hupB)
03400 DNA repair and recombination proteins [BR:
pva03400
]
Pvag_0380 (hupB)
DNA replication proteins [BR:
pva03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Pvag_0380 (hupB)
Chromosome and associated proteins [BR:
pva03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
Pvag_0380 (hupB)
DNA repair and recombination proteins [BR:
pva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
Pvag_0380 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
UBA_HYPK
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
ADO08593
LinkDB
All DBs
Position
413412..413693
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AA seq
93 aa
AA seq
DB search
MKRVNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAA
RTGRNPQTGKEITIPAGKVPGFRAGKALKDAVN
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgaagagagtgaataagtcacaattgatcgacaaaattgctgccgatgctgatatttcc
aaagctgcagcaggacgtgttttagatgcatttatgggctcagtttcagatgcgctgaaa
gagggtgatgaagtggctctggtgggtttcggcacattctctgtgcgtgaccgcgctgca
cgtaccggccgcaatccgcaaaccggtaaagagatcaccatcccggctggtaaagtaccc
ggtttccgtgctggtaaagcattgaaagacgctgtcaattaa
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