Pantoea vagans C9-1: Pvag_1481
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Entry
Pvag_1481 CDS
T01326
Symbol
yciR
Name
(GenBank) Uncharacterized protein yciR
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pva
Pantoea vagans C9-1
Pathway
pva02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Pvag_1481 (yciR)
Enzymes [BR:
pva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
Pvag_1481 (yciR)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_10
Motif
Other DBs
NCBI-ProteinID:
ADO09671
LinkDB
All DBs
Position
1562880..1564865
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AA seq
661 aa
AA seq
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MTDEHGQTLLYTLFGTTSPHWRLTADSDALHFAEDESSQTNIALPLTPGQAAMIRAMPVI
TSSINLTMTLQGIDVPMHFVGRKVNQASWAGTASAWGDTSAVARDLTLGLSFAEQVVSEA
NSVIVILDQRGNIQRFNRLSEEYTGLNEHEVIGRNVFQLFMTKQEASQSRRNIAGFFRDG
NSYEVERWVKTKKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRVLANTD
TVTGLPNRNAIHQQISLALERSEGDETGVVYLDLDNFKKVNDAYGHMFGDQLLQAVSLAI
LSCLGKDQTLGRLGGDEFVVLAEHTSQAALEAMSSRILERLRQPFRIGLIEVYSGCSIGI
AFAPLHGDDRESLIRNADTAMYHAKENGRGKFCVFAAEMNQRVFEYLWLDTNLRKALELD
HLLVHYQPKIDSDGQVRSAEALVRWNSPERGLVSPADFIPYAEESGLIVPLGRWVMLNVL
KQIIAWREQGIFLRVAVNVSARQLIDQSIYTDLKQALHEANITDCPIDIELTESCLIENE
TEALKLMKQFQELGAQVHLDDFGTGYSSLSQLARVPINAIKLDQSFIRDINKQPVSQSLV
RAIVAVAKALDLQVIAEGIETPDEEKFVLKSGVDGRQGYYYAKPMPAEQFGHWLAKHPAR
V
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgaacacgggcaaacgttgttgtacactctttttggtacaaccagccctcat
tggcgtctgaccgcggacagcgatgcgttgcattttgccgaagatgagtcatcacaaacc
aatatcgccctgccgctgacccccggccaggccgcaatgatccgcgcgatgccggtcatc
acctcaagcatcaatctgactatgacccttcagggcattgatgtgccgatgcattttgtc
ggacgtaaagtgaatcaggcttcatgggccggcaccgcctctgcctggggcgatacgtct
gcagttgcccgcgatttaaccctggggctgtcgttcgctgaacaggtggtttctgaagct
aattcggtgattgtaatcctcgatcagcgcggcaatattcagcgttttaaccgcctgagt
gaagaatataccggcctgaatgagcacgaggttattggccgtaacgtctttcagcttttt
atgaccaaacaggaagcctcacagtcacgacgcaacattgcgggcttcttccgtgacggt
aactcttatgaggttgagcgctgggtcaaaaccaaaaaaggtcagcgactgtttcttttt
cgtaataagtttgttcacagcggcagtggcaaaaatgaaattttcctcatctgttctggc
acagacatcaccgaggagcgacgcgcccaggaacgcctgcgggtgctggcaaacaccgac
acggtgaccggtttacccaatcgcaacgccattcatcaacagattagcctggcgctggag
cgatccgagggggatgagaccggcgtggtttatctcgacctcgataattttaaaaaagtg
aacgacgcctacggtcatatgttcggcgatcagttactgcaggcagtttcactggccatc
ctcagctgtctgggtaaagaccagaccctgggccgtctgggtggcgacgaatttgtggtg
ctggctgagcacaccagtcaggctgcactggaagcgatgtcttcccgcattcttgagcgg
ctgcgtcagcctttccgtatcgggctaatcgaagtttacagcggctgttcaattggcatc
gcttttgcgccgctgcatggcgacgaccgcgagagcctgattcgcaacgcagacaccgcg
atgtatcacgccaaagagaacgggcgcggcaagttctgcgtgtttgcggcagagatgaac
cagcgggtctttgagtatctgtggctggatactaacctgcgcaaggcgctggaactggat
catctgctggtgcactatcagccaaaaatcgacagcgatggccaggtccgcagcgctgaa
gcactggtgcgctggaactcaccagagcgtggtctggtctcgcccgctgactttattccc
tatgctgaagagtcagggctgattgtgccgctgggacgctgggtcatgctcaacgtgctg
aagcagattatcgcctggcgtgagcagggcatttttctgcgcgtcgccgtcaacgtttcg
gcccgtcagctgattgatcagagcatctacactgacctgaaacaggcgctgcacgaggct
aatatcaccgactgccccatcgatattgagctgaccgaaagctgcctgattgagaatgaa
actgaagcgctgaagctgatgaagcagtttcaggaactgggcgcacaggtgcacctggat
gactttggcaccggttactcctcgctttctcaactggcacgcgtgccaatcaatgccatc
aaactcgaccagagctttatccgcgatattaacaagcagccggtttcacaatcgctggtg
cgcgctatcgtcgccgtcgccaaggcgctcgatttgcaggtcattgctgagggtattgag
accccggatgaagagaagtttgtcctcaaaagtggtgtcgatgggcgtcagggttactat
tacgcaaaaccaatgcccgcggaacaatttgggcattggctggctaagcatcctgcccgc
gtttaa
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