Pantoea vagans C9-1: Pvag_1495
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Entry
Pvag_1495 CDS
T01326
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pva
Pantoea vagans C9-1
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pva03032
]
Pvag_1495 (topA)
03400 DNA repair and recombination proteins [BR:
pva03400
]
Pvag_1495 (topA)
Enzymes [BR:
pva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Pvag_1495 (topA)
DNA replication proteins [BR:
pva03032
]
Prokaryotic type
DNA Topoisomerases
Pvag_1495 (topA)
DNA repair and recombination proteins [BR:
pva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pvag_1495 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2399
Motif
Other DBs
NCBI-ProteinID:
ADO09685
LinkDB
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Position
complement(1578070..1580694)
Genome browser
AA seq
874 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSTAKKSADASTDKKVKDAS
TDKKVKKVKKDEKAALVSRMGVDPYHGWEADYQILPGKEKVVAELKALAANADHIYLATD
LDREGEAIAWHLREVIGGDDSRFSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFM
DRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVNAALTTPKG
DELSMDVTHKGDKAFRPVNRDETYAAVALLEKARYEIVDREDKPTSSKPGAPYITSTLQQ
AASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVAMARGYIESNFGKKYLPET
AITYASKENSQEAHEAIRPSDVEVVAEKLKDMEADAQKLYQLIWRQFVACQMTPAKYDSS
TITAAAGEFKLKAKGRILRFDGWTKVMPALRKNDEDRTLPAVSVGDVLDLQQLLPGQHFT
KPPARFSEASLVRELEKRGIGRPSTYAAITSTIQDRGYVRVENRRFYAEKMGEIVTDRLE
ENFRELMNYDFTARMESNLDQVANNEAQWKAVLDHFFADFTQQLELAEKDPEEGGMQPNQ
MVLTSIECPTCSRQMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNILEGDDA
ETNALRARRRCQKCGTAMDSYLIDNERKLHVCGNNPECDGYEIEKGEFRIKGYDGPVVEC
EKCGSEMHLKMGRFGKYMACTNEECKNTRKILRSGEVAPPKEDPVPLPELACEKSDAYFV
LRDGAAGVFLAANTFPKSRETRAPLVEELQRFKDRLPEKLKYLADAPAADPEGNKTLVRF
SRKTKQQYVSSEKEGKATGWSAFYIDGKWQEAKK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcactcgttattgttgagtccccggcaaaggctaaaacaatcaataaatac
ctgggtagtgactacgtggttaaatccagcgtgggtcatatccgggatctgccgaccagt
ggttcaaccgcgaagaagagtgctgacgcttcgacagataagaaagtcaaagacgcttca
actgacaagaaagtcaaaaaagttaaaaaagatgagaaagccgcactcgtcagccgcatg
ggtgtagacccttatcacggctgggaagcggattatcagattctgcccggcaaagagaaa
gtcgttgctgaactgaaggcgttagccgccaatgctgaccacatctatctcgcaaccgac
cttgaccgcgaaggggaagccattgcctggcacctgcgggaagtgatcggtggtgatgac
tcgcgcttcagccgcgtggtctttaacgaaatcaccaagaatgcgattcgtcaggcgttt
gaaaagccgggcgaactgaatattgaccgggtaaatgctcagcaggcgcgtcgtttcatg
gaccgcgtggtgggctacatggtctcgccactgctgtggaaaaaaattgcccgtggcctc
tcggccggacgtgtgcaatctgttgcggttcgcctggtggtggaacgtgaacgtgagatc
aaagcctttgttcccgaagagtactgggaagttaatgccgcactgaccacgccaaaaggc
gatgagctgtccatggacgtgacgcacaaaggtgataaagccttccgtccggtcaatcgc
gacgagacctatgccgcggtggcgctgctggaaaaagcgcgctatgagatcgtcgaccgt
gaagataagccgaccagcagcaagccgggcgcgccttatatcacctcgacactgcagcag
gctgccagcacccgtctgggctttggcgtgaagaaaacgatgatgatggctcagcgcctg
tacgaagccggtcacatcacctatatgcgtaccgactcgaccaacctgagtcaggatgcg
gtcgccatggcgcgtggctatatcgaaagcaatttcggtaaaaagtatctgcctgaaacc
gccattacttacgccagtaaagagaattcccaggaagcgcacgaagcgattcgtccttcc
gacgtggaagtggtggcggaaaagctgaaggatatggaagcggatgcgcagaaactctat
cagctgatctggcgtcagtttgttgcctgtcagatgacaccagcaaaatatgattccagc
accattacagcggcggcgggtgaatttaaactcaaagcaaaaggccgtattctgcgtttt
gatggctggaccaaagtcatgccagcgctgcgtaagaatgatgaagatcgtacattgcct
gccgtcagcgtgggtgatgttctggatctgcaacagcttcttccgggccagcacttcacc
aagccaccggcgcgcttcagcgaagcgtcactggtgcgtgaacttgagaagcgcggcatt
ggtcgtccatccacgtacgcagccattacctcgaccattcaggatcgcggctacgtgcgg
gtagaaaaccgccgcttctatgcggaaaaaatgggtgaaatcgtcaccgatcgtctggaa
gagaacttccgcgaactgatgaactacgatttcaccgcccgcatggagagcaatctcgat
caggtggcgaataacgaggcgcaatggaaagcggttctcgatcacttcttcgccgatttt
actcagcagcttgaactggctgagaaagatcctgaagagggaggcatgcagccgaaccag
atggtgctgacctcgattgagtgtccgacctgtagccgtcagatgggaatccgtaccgcc
agtaccggcgttttcctgggctgttccggctatgcgctgccgcctaaagagcgatgcaaa
cagaccatcaacctgattccggaaaatgaagtcctcaatattctggaaggcgatgatgct
gaaaccaacgccctgcgtgcccgtcgtcgctgccagaagtgtggcaccgcgatggacagc
tacctgatcgacaacgaacgtaaactgcacgtctgtggtaataacccggagtgtgacggt
tacgaaatcgagaagggcgagttccgtatcaaaggctatgacggcccggtggtggagtgc
gagaagtgtggttcggagatgcacctgaagatgggacgctttggtaagtacatggcgtgt
accaacgaagagtgcaaaaacacccgcaagattctgcgcagtggtgaagttgcaccgccg
aaagaagatccggttccgctgccagagctggcgtgtgagaagtccgatgcttacttcgtg
ttgcgtgacggcgcagcgggcgttttcctcgcggccaacaccttcccgaaatcacgcgaa
acgcgtgcgccgctggtggaggagcttcagcgcttcaaagatcgtctgcctgagaagctg
aaatatctggccgacgcgccagcagccgatccggaaggcaataaaacgctggtgcgcttc
agccgcaaaaccaaacagcagtatgtctcctctgaaaaagagggtaaggcaaccggctgg
tccgccttctatatagatggcaagtggcaggaagcgaaaaagtaa
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