Pantoea vagans C9-1: Pvag_1574
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Entry
Pvag_1574 CDS
T01326
Symbol
rnd
Name
(GenBank) RNase D, processes tRNA precursor
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pva
Pantoea vagans C9-1
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pva03016
]
Pvag_1574 (rnd)
Enzymes [BR:
pva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Pvag_1574 (rnd)
Transfer RNA biogenesis [BR:
pva03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pvag_1574 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ADO09762
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All DBs
Position
complement(1655868..1656989)
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AA seq
373 aa
AA seq
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MNYSLIDQDEQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNI
RDWSPFIALLTDTSVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSWGFAS
MVAHFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMAAAL
SECDNLCQRRLDSVAPDEAWRDITNAWQLRPRQLAALQRLAAWRLKLAREKDMAVNFVVR
EEHLWKVARFMPGSLGELDHLGLSGHEIRFHGKTLVALVAEAEALDENELPAPLGNLIDH
PHYKQVFKAMKALVQQVSEQSGFSQELLASRRQINQVLSLHWGLKPQGRQPELLTGWRGE
LLKPGIEEILAGC
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtgaactattcccttattgaccaggatgaacaactggctgacgtgtgccagaaagcccgc
cagcatgcagcggtagcactggacaccgaattcgtccgcacccgcacctactaccctcag
cttggcctgatccagctgttcgacgatcaccagctggtgctgattgacccgctaaatatc
cgtgactggtcaccctttattgcgctactgaccgacaccagcgtgactaaattcctgcat
gccggaggagaagatctggaagtcttcctgcaccgtttcggcgtgctgccgacgccgatg
atcgacacccagattctggcagccttctccggccagcccctctcctggggctttgcctcc
atggtggcgcatttcacgcaggtcgagctggataaaagtgaatcacgtaccgactggctg
gcacgccctctgacccagcgtcagtgcgagtatgcggcggcggacgttcactatctgctg
ccgattgcccgtcagttgatgattaacacggaagaggccggcaacatggcggcggcactg
agtgagtgcgataacctgtgtcagcgccgtctcgacagtgtggcaccggatgaagcctgg
cgggatatcaccaacgcctggcaactgcgtccgcgtcagctggcggcactgcaacggctg
gcggcctggcgtctgaagctggcgcgtgaaaaggatatggcggttaattttgtggtgcgt
gaagaacatctgtggaaagtggcgcgctttatgccaggctctctgggtgagctggatcat
ctggggctgtcaggccacgaaatccgtttccacggcaaaacgctggtggcgctggtggcc
gaagcagaggcgcttgacgagaatgaactgccggctccgctgggcaatctgatcgaccat
ccgcactacaagcaggtgtttaaggcaatgaaggcgctggtacagcaggtgagcgagcag
agcggattcagtcaggagttactggcgtcacgacgtcagattaatcaggtgctaagcctg
cactggggcctgaagccacagggacgtcagccggagctacttaccggatggcggggcgaa
ctgctgaaacccggcattgaggagattcttgcgggttgttaa
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