Pantoea vagans C9-1: Pvag_2492
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Entry
Pvag_2492 CDS
T01326
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pva
Pantoea vagans C9-1
Pathway
pva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pvag_2492 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pva03400
]
Pvag_2492 (recD)
Enzymes [BR:
pva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pvag_2492 (recD)
DNA repair and recombination proteins [BR:
pva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pvag_2492 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecD_N
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
SH3_13
AAA_11
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
UvrD_C
nSTAND3
DEAD
PhoH
AAA_28
PE
T2SSE
CbiA
AAA_33
ResIII
DO-GTPase1
AAA_24
TrwB_AAD_bind
MukB
AAA
ABC_tran
SRP54
ZapD
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ADO10653
LinkDB
All DBs
Position
complement(2657755..2659596)
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AA seq
613 aa
AA seq
DB search
MSDMLSLLLQAVEKRLLRPLDIQFARLMATESQPALLLAAACVSAEAGEGHVCLPLSNLC
EDSLFAGRQPALAQAIWQAAGKPDDWPSLLADWSAVSNGSRVTPLVLSNQRLYLHRLWHS
EGRVADFFAAQDVKTAFDMRAAGDVLNSLFGDQPENWQKIAAAVALTRKTAVISGGPGTG
KTTTVAKLLAALIRLNPGALRIQLAAPTGKAAARLTESLGRALQDLAVSDEERRRFPAEA
TTLHRLLGAQPDTQRLRYHAGNPLHLDVLVVDEASMVDLSMMAKLIAALPAHARVVFLGD
RDQLASVEAGAVLGDICRCTESGYSLARAEQLALLTGCTLQGSDDGQAPVVRDSICLLQK
SYRFDASSGIGQLAKAINLGDAEQVRAVFAAAHDDVSYQTLNSAQAYQVMLDEVAQGYQP
FLQLIRQQADPAEVIAAFGRYQLLCALRDGPFGVQGLNQRIEQRLMQLQRIRRPGIGSRW
YAGRPVMITRNDSALGLFNGDIGITLRDEEGNLKVFFPLPDGSIKAIQPSRLPSHETAWV
MTVHKSQGSEFDHTALVMPTQFLPVLTRELVYTAITRARKQLTIYSEPGVFQRAVQLQTQ
RRSGLVERLGETG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacatgctgagtctgctgctgcaggcggttgagaagcgtctcctgcggccgctg
gatattcagtttgcccgtctgatggcgacagaatcacaacctgcgctgctgctggcggcc
gcctgcgtcagcgcggaggccggtgaaggtcacgtctgtctgccgctgagcaacctctgt
gaagacagtctgtttgccgggcgtcagcctgcgctggcccaggccatctggcaggcagcg
ggtaagccggatgactggccatcactcctggcagactggtcggcggtcagtaatggcagt
cgggtgacgccgctggtgctgagcaaccaacgtttgtatctgcatcggctatggcacagt
gaaggccgggtcgccgacttttttgctgcgcaggacgtgaaaaccgcgtttgatatgcgt
gccgcgggtgacgtgctgaacagtctgtttggtgaccagccggagaactggcagaaaatt
gctgcggccgtggcgctgacccgcaagacggcggtcatttccggcgggccgggcaccggt
aaaaccaccaccgtggcgaaactcctcgctgccctgattcgcctgaatcccggcgcgctg
cggattcagctggcagcaccgacaggcaaagccgctgcgcgactgaccgagtcgctgggc
cgggcgctgcaggatctggcggtcagcgacgaagagcggcggcgttttcccgccgaagcc
accacgctgcatcgtctgctgggcgcacagcccgatacccagcggttacgctaccatgcc
ggtaacccactgcatcttgatgtgctggtagtggatgaagcgtcgatggtcgatctctcg
atgatggcaaaactgatcgccgcgctgcctgcccatgcccgcgtggtgtttctgggcgac
cgcgatcagctcgcctccgttgaagccggtgcggtgctgggcgatatctgccgctgcacg
gaaagcggctacagcctggcgcgggccgaacagctcgccctgctgaccggctgtacgctg
cagggcagtgacgatggacaggcaccggtcgtgcgcgacagcatctgcctgctgcaaaaa
agttatcgttttgacgcttcatccggcatcggccagctggcaaaagcgatcaaccttggt
gatgcagagcaggtcagggcggtatttgctgcggcccatgacgatgtcagttaccagacg
ctgaacagcgcgcaagcgtatcaggtgatgctggatgaggtcgcacagggctatcagccc
ttcctgcagcttatccgacagcaggcggatcctgctgaggtgattgccgcctttggccgt
tatcagctgctgtgtgcgttacgtgacgggccatttggcgtgcagggcctgaaccagcgt
attgagcagcgactgatgcagctgcagcgcatccggcgtcctggtatcggcagtcgctgg
tatgccgggcgtccggtgatgatcacccgaaatgacagtgcgctcggcctgtttaacggt
gatatcggcattacgctgcgggatgaagagggtaacctgaaggtctttttcccgctgccg
gatgggtcaatcaaggcgatccagccgagccggttaccttcacatgaaacggcctgggtg
atgacggtgcataaatcgcaggggtcggagttcgaccacactgcgctggtgatgccgacg
cagtttctgccggtgctgacccgagaactggtctataccgcgattacccgcgcacgtaag
caactgaccatttacagcgaaccgggcgtatttcagcgcgccgtgcagctgcagacgcag
cgacgcagcggtctggtggaacgactgggtgaaaccggctga
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