Pantoea vagans C9-1: Pvag_2785
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Entry
Pvag_2785 CDS
T01326
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pva
Pantoea vagans C9-1
Pathway
pva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pvag_2785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pva03019
]
Pvag_2785
03016 Transfer RNA biogenesis [BR:
pva03016
]
Pvag_2785
Enzymes [BR:
pva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pvag_2785
Messenger RNA biogenesis [BR:
pva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pvag_2785
Transfer RNA biogenesis [BR:
pva03016
]
Prokaryotic type
tRNA degradation factors
Pvag_2785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
HTH_20
LexA_DNA_bind
YqfQ
Motif
Other DBs
NCBI-ProteinID:
ADO10944
LinkDB
All DBs
Position
complement(2963213..2965708)
Genome browser
AA seq
831 aa
AA seq
DB search
MSKDPFQDREAEKYENPIPSREFILALLEKREKPASREELAEEMNLHEEEHLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDLYLSAEQMKFCMH
GDVILAQPLGADRKGRREARVVRVQEPRNNQIVGRYFTDAGAGFVVPDDSRLSFDILIPP
EETMNARMGSVVVVELVQRPNRRTKAIGKVAEILGDDMGTSLAVDMALRTHEIPHTWPPE
VEAQVSKLKEEVPEEAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAHQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGKLTGFKHYEAVMNSHARLTYNKVWNILQGDKELRQQYAPLVKDLEELHNLYQVLDAA
REERGGISFETEEAKFIFNAERRIERVERTSRNDAHKLIEECMILANIASARFVEKNQEP
ALFRDHDRPTDESIKSFRTVLNELGLTLPGGNKPQPVDYAALLKQVADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLTLHRAIKYLLAKEQDEGKGLVQRA
IKYLMPKERNVAKDMTTATGGYHYEMPEMLQLGLHCSLTERRADEATRDVADWLKCDFMQ
DQVGNVFNGVISSVTGFGFFVRLSDLFIDGLVHVSTLDNDYYRFDPVGQRLIGESGGRTY
RLGDTVEVRVEAVHMDERKIDFALISSQRQVRGEGKTARDRAKREDNAPAKRRRNVNKKS
NFEPDAAFRGDKGKPAAANTEKKSKNVSEKTRKIAAATRAKRARKKAEPEG
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggatagagaagctgaaaaatacgaaaaccctattccaagc
cgtgaatttattctggcgctgttagaaaaacgtgaaaaaccagccagccgtgaagagctg
gctgaagagatgaacctgcacgaagaagagcaccttgaggcgctgcgtcgccgccttcgc
gccatggagcgtgatggtcagctggtgttcacccgccgtcaatgctatgcgctgccagaa
cgtcttgatctcctgcgcggtaaagtcattggccaccgtgatggctacggcttcctgcgg
gcagaaggtcagaaagatgacctttacctctccgcagagcagatgaaattctgtatgcat
ggtgacgtaatcctggcgcagccgctgggtgccgatcgcaaaggccgccgcgaagcgcgc
gtggtccgcgtgcaggaaccacgtaacaatcagatcgttggccgctactttaccgatgcc
ggtgccggcttcgtggtaccggacgacagtcgcctgagttttgatatcctcatcccgcct
gaagagacgatgaatgcccgcatgggttccgtggtggtggttgagctggtccagcgtccg
aaccgccgcaccaaagcgatcggtaaagtggctgagattctgggcgatgatatgggcacc
agcctggccgttgatatggcgctgcgtacccatgaaattccgcacacctggccgccagaa
gtggaagctcaggtcagcaagctgaaagaagaagtcccggaagaggccaaaaaaggccgc
gtcgatctgcgcaaactgccgctggtcaccattgatggtgaagatgcccgtgactttgat
gatgcggtctactgcgagaaaaaacgcggtggcggatggcgtctgtgggtcgctatcgcc
gatgtgagctattacgtccgtcctggcacgccactggatgacgaagcgcatcagcgcggc
acctcagtctacttcccgtcgcaggttgtgccgatgctgccggaagtgctgtcgaatggc
ttatgctcgcttaacccgcaggtcgatcgactctgtatggtgtgcgagatgaccatttcg
accaaaggtaagctcaccggctttaagcattacgaagcggtgatgaactcccatgcgcgt
ctgacctacaacaaagtctggaacatcctgcagggcgacaaagagctgcgtcagcagtat
gcaccgctggtcaaagatcttgaagagctgcacaacctctaccaggtactggacgctgca
cgtgaagagcgcggcggtatctcgtttgaaacggaagaggcgaagttcatcttcaacgcc
gagcgccgtattgaacgggttgagcgcacgtcacgtaatgacgcccacaagctgatcgaa
gagtgcatgatcctggcgaacatcgcctcagcacgcttcgttgagaaaaatcaggaaccg
gcactgttccgcgatcacgatcgcccgaccgatgagagcatcaagagcttccgtaccgtg
ctcaacgaactgggattgactctgccaggcggcaacaaaccgcagcctgtggattatgcg
gcgctgctgaagcaggttgccgatcgtcctgatgcagaaatgctgcaaaccatgctgctg
cgttcgatgaagcaggcggtatacgatccggaaaaccgcggtcactttggtctggcactc
tcatcgtatgcgcactttacttcgccaattcgccgctacccggatctgacgctgcaccgc
gccattaaatatctgctggcaaaagagcaggatgaaggtaaaggtctggtacaacgcgcc
atcaaatatctgatgccgaaggagcgcaatgtcgccaaagatatgacgacagcaaccggc
ggctatcactacgagatgccggagatgctgcagctgggtctgcactgttccctgaccgag
cgtcgcgccgatgaagcaacgcgcgacgtcgcggactggctcaagtgtgacttcatgcag
gatcaggtcggcaatgtcttcaacggcgtcatctccagcgtgaccggatttggcttcttt
gtccgcctgagcgatctgttcatcgatggtctggtgcacgtttcaaccctcgacaacgat
tactaccgttttgacccggtaggtcagcgtctgatcggtgaatcgggcggccgcacctat
cgtctgggtgacaccgttgaagtgcgtgtcgaggcggtccatatggacgagcgtaaaatc
gactttgctcttatctccagccagcgtcaggtgcgtggtgaaggtaaaactgcgcgtgat
cgggcgaagcgtgaagacaacgcgccagctaagcgtcgtcgtaacgtgaacaaaaagtcc
aacttcgagccggatgctgcattccggggtgacaagggcaaacctgccgccgccaatacc
gagaaaaaaagtaaaaacgtctcggaaaaaacccgtaaaatcgccgccgccacccgggcg
aagcgcgccagaaaaaaagctgagcctgaaggctga
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