Pantoea vagans C9-1: Pvag_3685
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Entry
Pvag_3685 CDS
T01326
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pva
Pantoea vagans C9-1
Pathway
pva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pvag_3685 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pva03019
]
Pvag_3685 (deaD)
03009 Ribosome biogenesis [BR:
pva03009
]
Pvag_3685 (deaD)
Enzymes [BR:
pva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pvag_3685 (deaD)
Messenger RNA biogenesis [BR:
pva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pvag_3685 (deaD)
Ribosome biogenesis [BR:
pva03009
]
Prokaryotic type
rRNA helicases
Pvag_3685 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_C
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADO11801
LinkDB
All DBs
Position
3919177..3921099
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AA seq
640 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPTVKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDQYRALLTKMQPEDELDLETL
AAALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARSDRGPRESRDSRDGDR
PRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGNHSTIELPK
GMPGDVLQHFTRTRILNKPMNMQLLGDAQPNEGRGDRRPAGAGGERRSGPGAANREGGRR
FSSERREGGREGGGRTFNREGSRGPRREEGAAAAPRRRDA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgaccttggcctgaacgccgacatccttgaatca
ctgaatggcatgggctacgtaaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtgttaggcatggcgcagaccgggagtggtaaaactgcggcgttc
tctctgccgctgttaaacaacatcgacccgactgttaaagcaccacagattctggtgctg
gcaccgacccgcgaactggcggtacaggttgctgaagcaatcactgaattctctaagcac
atgcgtggcctgaacgtggttgccctttacggcggccagcgttatgacgtgcagctgcgc
gctctgcgtcagggaccacaggttgttgtgggtacccctggtcgtctgcttgaccacctg
aaacgcggcacgttagaactctctaacctgcgcggtctggtgctggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggctcagattccagccggt
catcagactgcgctgttctctgcaaccatgccggaagcgattcgtcgcatcaccaaacgc
ttcatgaaagatccacaggaagtgcgtattcagtcaagcatgacaacgcgtcctgacatc
agccagagttactggaccgcttacggtcgtaaaacagacgcactggttcgcttcctggaa
gcagaagactttgatgctgccatcatcttcgtgcgtactaaaaacgcaacgctggaagtg
gcagaagcgctggagcgtagtggctataacagcgccgcgctgaacggtgatatgaaccag
gcactgcgtgagcagacgctggagcgcctgaaagatggtcgtctggacatcctgattgca
accgatgttgcggcccgtggcctggacgttgagcgtatcagcctggttgtaaactacgac
atcccgatggatgcagaatcatacgttcaccgtatcggccgtaccggccgtgccggtcgt
gctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatcgaa
cgtaccatgaagctgactattcctgaagtcgagctgcctaacgcagaactgctgggtgag
cgtcgtctggccaagtttgccgctaaagttcagcagcagctggaaagcagcgatctggat
cagtaccgtgctctgctgactaaaatgcagccggaagatgaactggatctggaaactctg
gcagccgcactgctgaagatggcacagggcgaacgtcctctgattctgccaccagaagca
ccacgtcctgcacgtcgcgaataccgcgatcgtgacgagcgtgatggccgtcgtgacagc
cgtgaagcgcgtagcgatcgtggcccacgtgaaagccgtgacagccgtgatggcgatcgt
ccacgtcgcgaacgtcgtgacgttggcgaaatgcagctgtaccgcatcgaagtgggccgt
gatgatggtgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgacatcagc
agccgttacatcggtaacatcaagctgttcggtaaccactcgactatcgagctgccgaaa
ggcatgccaggcgatgtgctgcagcacttcacccgtacgcgtattctgaacaaaccgatg
aatatgcagctgctgggtgatgcacagccaaacgaaggccgtggcgatcgtcgtccagcc
ggtgctggcggtgagcgtcgcagcggtcctggcgcagccaaccgtgaaggtggtcgtcgc
ttctcttcagagcgccgtgaaggtggtcgtgaaggcggtggacgtactttcaaccgtgaa
ggtagccgtggtccacgtcgtgaagaaggcgcagctgccgctccacgtcgtcgtgatgca
taa
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