Polaromonas vacuolata: HC248_00056
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Entry
HC248_00056 CDS
T06542
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvac
Polaromonas vacuolata
Pathway
pvac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HC248_00056 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvac03019
]
HC248_00056 (recQ)
03400 DNA repair and recombination proteins [BR:
pvac03400
]
HC248_00056 (recQ)
Enzymes [BR:
pvac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HC248_00056 (recQ)
Messenger RNA biogenesis [BR:
pvac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HC248_00056 (recQ)
DNA repair and recombination proteins [BR:
pvac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HC248_00056 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJC54794
UniProt:
A0A6H2H5B3
LinkDB
All DBs
Position
complement(58766..60952)
Genome browser
AA seq
728 aa
AA seq
DB search
MDQPTPLNILSQVFGYDSFRGPQRDIVEHVIAGGDALVLMPTGGGKSLCYQIPAIVRQNA
GHGVTIVVSPLIALMHDQVGALHEAGVSAAFLNSTQTFEESSALEKQLLRAELTLLYAAP
ERINTPRMKDLLRSLNQRGKLSLFAIDEAHCVSQWGHDFRPEYRSLSLLHEMFPDVPRMA
LTATADALTRQDMVERLKLETAREFVSSFDRPNIRYTIVEKTDATRQLLRFIETEHAAEA
GIVYCQSRKRVEEVAGMLQAAGLKAMAYHAGLDSSLRQQRQDQFLRDDAMIMVATIAFGM
GIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLSADAWMTYGLQDVVNQRRMIDTSEAA
SEEFKQAMRGKLDALLSLAESTHCRRASLLSYFGEELKSKSENSKNENSNDLSGAKTTSA
QALNKLEIEPITGGSALHEVKSVGVNESSDGPPQASSAPSGGSALHEVKSVGVNESSDGP
PRASSAPSGGSALHEVKSVGVNNYFCGNCDNCLFPPAVWDATEAARKMLSCIYRVHQASG
ISFGAGHLMDILRGKTTEKVLQYGHERLSTFGIGTDVGETQWRAVLRQLITKDMVRVDTE
AFNTLQLLPEARQVLKGLATVLLREQIASSSTPGKRTKTTVKTSAKGIAEAALNAGALER
LAGLKEWRAEIAREHNLPAFVIFHDSTLRAIAERSPVKLSDLEGIAGIGVKKLEAYGAEV
LRVCAMSA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaccgaccccgctcaacatactttcccaagtattcggttacgacagctttcgc
ggcccgcaacgtgacatcgttgaacatgtgatcgccggcggggatgcgttagtactcatg
cccacaggcggtggcaaatcactgtgctatcagataccggccatagtgcggcaaaacgca
ggtcatggtgtgacgattgtggtctcgccactcatcgcgctgatgcacgaccaagttggc
gcattgcatgaggcgggtgtgtcggcggcatttttaaattcgacccaaacgtttgaagaa
agcagcgcactcgaaaagcaattgctgcgcgcagaactgaccctgctctacgccgcgccc
gagcgcatcaacacgccgcgcatgaaggacttgctgcgctcgctaaaccagcgcggcaaa
ctcagtttgtttgcgattgatgaagcccattgcgtgagccagtggggccacgacttcagg
cctgaataccgctcgctgagtttgctgcatgaaatgtttcccgatgtgccgcgtatggcg
cttactgcgaccgccgatgcactcacgcgccaagacatggttgagcgtttaaaacttgaa
acagcacgtgaatttgtcagcagttttgaccggcccaacatccgctacaccatcgtcgaa
aaaaccgatgccacacgccagttgctgcgttttatagaaaccgagcacgccgccgaagcc
ggcattgtttactgccaatcacgcaaacgcgtggaagaagttgccggcatgttgcaggcc
gcagggctgaaagccatggcttatcacgccggcttagacagtagcttgcggcaacaaagg
caagaccaatttttacgcgacgacgccatgattatggtcgccacgattgccttcggtatg
ggcattgacaaacccgatgtacgctttgtcgctcacctggacatgccaaaaaatatagaa
ggctattaccaagaaactggacgtgcaggacgtgatggtttgagcgccgatgcgtggatg
acttacggcttgcaagacgtggttaatcaacgccgaatgatagacaccagcgaggccgcc
agtgaagaattcaagcaagccatgcgcggaaaactcgacgccttactcagccttgccgag
agcacgcattgccgacgcgcgagtttgctttcgtattttggtgaggagcttaaaagcaaa
tctgaaaattcaaaaaacgagaatagcaacgatttaagtggggctaaaactacgagtgct
caagccttaaataaattagaaattgagccgataacggggggcagcgcattacacgaagtg
aaaagcgtgggggttaatgaaagcagcgacgggccgccccaagcaagttccgccccctcg
gggggcagcgcattacacgaagtgaaaagcgtgggggttaatgaaagcagcgacgggccg
ccccgagcaagttccgccccctcggggggcagcgcattacacgaagtgaaaagcgtgggg
gtcaacaattacttttgcggaaactgcgacaactgtttatttccgcccgcggtttgggat
gcgactgaagccgcacgcaaaatgctcagctgtatttaccgcgttcatcaagccagtggt
atcagttttggtgccggccatttaatggacatactgcgcggtaaaacaactgaaaaagtc
ttgcaatacggccatgaacgcttgagcacttttggcattggcactgatgtgggcgagacc
cagtggcgcgccgtattgcgccaactcattactaaagacatggtgcgggtagacaccgag
gcctttaacaccttgcagttattgcccgaagcgcgccaagtattaaaaggcctggcgaca
gtgctgctgcgcgaacagatagccagttcgtcaacgccaggcaagcgcacaaaaacaacg
gtcaaaacgtctgcaaaaggcattgcagaagcggcgctcaatgctggcgcactagagcgc
ttggccggcttgaaagagtggcgcgcagaaattgcacgcgaacataatctgccagccttt
gtgatctttcatgactcaactttgcgcgccattgcagaacgctcgccagttaaattatct
gacctagaaggcattgccggcattggtgtgaaaaagcttgaggcttatggtgcagaagtt
ttacgggtctgcgctatgagcgcctaa
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