Polaromonas vacuolata: HC248_00770
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Entry
HC248_00770 CDS
T06542
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pvac
Polaromonas vacuolata
Pathway
pvac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HC248_00770 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvac03019
]
HC248_00770 (rne)
03009 Ribosome biogenesis [BR:
pvac03009
]
HC248_00770 (rne)
Enzymes [BR:
pvac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HC248_00770 (rne)
Messenger RNA biogenesis [BR:
pvac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HC248_00770 (rne)
Ribosome biogenesis [BR:
pvac03009
]
Prokaryotic type
rRNA processing factors
HC248_00770 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QJC55490
UniProt:
A0A6H2H6M6
LinkDB
All DBs
Position
complement(819147..822350)
Genome browser
AA seq
1067 aa
AA seq
DB search
MKRMLVNATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAQGVPVNQARISDVIREGQEMLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPGGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGASKGKGAFLIYQESSLVIRAIRDYFNSDIGDILFDTDDVYEQARQ
FMAHVMPEHEHRVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVD
VNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENRL
RDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQI
LRIIQEESLKDSTASVLCQVPVDVASFLLNEKRSEISKIELKQRINVLLVPNKTLETPNY
RLERLKHDDPRLDNIEASYKMAVEMDDTTAVTRRSQEKQNRQEPIIKGVLPDAPAPMVPP
KPQATAAAPIPVAVPAEKGFFGWIKDLFSAEPAVAEPATPAPEVKKEERDTARRDGRGGR
EGGRDGRRGGRNRNDARTEGKADGRADGRPVSEGRAEGRTDGRPADGRNEARGERAEGGR
SEGRGGERRERNPEGRTERPTGEGRAESPRNQETREPREPRAEGGREPREPREPRAEGGR
EPREPRAEGSRGRRERPERTDRIARDPVEQDLALANQAAMAAAGNSEEQRQERAPQDRSN
QEAVQGQRAERGDGRRERGAERGGERGGRRNERRVEEDSAQQNLALDAQAAPQARDVSAQ
LDNAPLADRSEGNGPDAEVGADQRPPRRSRDRYGRERRERGDADNRESRAPQAASNDFQP
SQPPAYAETNAAEFAPEFVANTAAAQAPALTAPPVAAVAPVAAVTPTPVATPAPAAQAKP
VEAPVVVAPATIATAPAAGQALPQIDSYALPMQDLADVAQSSGLQWVNSNTAKIAQVAAA
IAAEAKPVHVPRMRPVAVVSGEGPLVLVETKRDLSAMALPSEDKPAA
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctggtaaacgccacacaatcagaagaacgccgtctggcgatagttgac
ggacaaaaactcttagactacgaaatcgaaatcgaaggccgcgaacaacgcaaaggcaac
atctataaagccgtcgtcacacgcgtagagccatccttggaagcctgcttcgtcgactac
ggcgaagaccgtcacggctttttgcctttcaaagaaatctcgcgtcaatacttcgcccaa
ggcgtgccagtcaatcaggcacgtattagcgacgtgatccgcgaaggccaggaaatgctg
gtccaagtcgaaaaagaagagcgcggtaacaaaggtgcggcgctaacaacttttgtctcg
ctagctggacgctacgttgtactgatgccgaacaacccacgtggtggcggtgttagccgc
cgcattgagggcgacgaccgggccgagctcaaagaagccatggaccagctcgaatacccg
ggcggcatgagcatcatcgcgcgcaccgccggcattggccgcagcgcgccagagttgcag
tgggacttgaactacctgctcaagctctggaccgccattgacggcgccagcaagggcaag
ggcgctttcctgatttatcaggaatctagcctagtcattcgcgccatccgcgactatttc
aacagcgacatcggcgacattttgttcgacaccgacgacgtctacgagcaagcgcgccaa
ttcatggcccacgtaatgcctgagcatgagcaccgcgttaagcgctaccgtgacgacgcg
cctttgttctcgcgtttccagatcgagcaccaaatcgaatcggcctatgcccgcacggta
caactgccatccggcggcgctatcgtgattgaccataccgaagccttggtttctgttgac
gtcaactcggcccgcgccatcaagggcggggacatcgaagagaccgcaacccgcaccaac
ttagaagccgccgacgaagtcgcacgccagatgcgcttacgcgatttgggtggcctgatc
gtgatcgactttatcgacatggaagagtcacgcaaccgccgtgatgtggaaaaccgcctg
cgcgacgcgctgcgccaagaccgcgcccgtgtgcagttcggcaccatcagcaaattcggc
ctgatggagatgagccgccagcgcctgcgtccagccctctcagaaggtgcctcgattcct
tgcccacgttgcggcggttcaggccatattcgcgacaccgagagctcggcattgcaaatt
ttgcgcatcatccaagaagagtcgctcaaagacagcaccgcctccgtgctgtgccaggta
cccgtcgacgtggcgtctttcctgctcaatgaaaagcgttcagaaatcagcaaaattgaa
ctcaagcaacgcatcaacgtgctgctagtacccaacaaaacgctggagactcccaactac
cgcctagagcgcctcaagcacgacgacccgcgccttgacaacatcgaagcgagctacaaa
atggccgtcgagatggacgacacaacagccgtgacgcgccgcagccaagaaaagcaaaac
cgtcaagagcccatcatcaaaggcgtgttgcccgatgcaccggcgcccatggttccacct
aagccgcaagccaccgcagcagcaccgattccggttgctgtaccagcggaaaaaggcttt
tttggttggatcaaggatttgttttctgccgaaccggcagtcgcagagccagcaacaccc
gcaccagaagtgaaaaaagaagagcgcgacaccgcacgccgtgacggccgcggtggccgc
gaaggtggcagagatggtcgccgtggtggacgcaaccgcaatgacgctcgcaccgaaggt
aaagctgatggacgcgctgatggtcgtccagtctcagaaggtcgagcagaaggccgaaca
gatggccgcccagccgatggtcgcaacgaagcccgcggtgagcgtgctgaaggcggtcgt
tctgaaggccgtggcggtgagcgccgcgaacgcaatccagaaggtcgcactgaacgccca
accggtgaaggccgcgcagaatcaccgcgcaaccaagagactcgtgagccacgtgaaccg
cgcgccgaaggtggccgcgaaccgcgtgaaccacgcgagccccgcgcagaaggtggccgt
gagccacgtgaaccccgcgcagaaggcagtcgtggtcgccgcgaacggccagagcgcaca
gaccgcattgctcgcgatccagtagagcaggacttggcactggccaatcaagccgccatg
gccgctgccggtaactcggaagagcagcgccaagaacgtgcacctcaagatcgctccaac
caagaagccgttcaaggccaacgtgccgagcgcggcgatggtcgccgtgaacgtggtgcg
gaacgcggtggtgagcgtggcggtcgtcgcaacgagcgccgtgttgaagaagacagtgct
cagcaaaacttggcacttgatgcgcaagcagcgccacaagcccgtgacgtttcggctcag
ctcgataacgcaccccttgccgatcgcagtgaaggaaacggtccagacgcagaagtaggc
gccgatcagcgcccaccacgccgcagccgcgaccgttatggccgcgaacgccgcgaacgc
ggtgatgctgacaaccgcgaaagccgcgcgccgcaagctgcaagcaacgactttcagcct
agccaaccaccggcctatgccgagactaatgctgccgagtttgcgcctgagtttgtagcc
aacacagcagctgcacaggcgcctgcgttgaccgcacctcctgtagccgctgttgcacct
gtagcagctgtgactccaacgccagttgcgactccagcaccggcagcacaagccaagcct
gtcgaagcacccgttgtagtggcaccagccaccatagccaccgccccagccgccggacaa
gccttgccgcaaattgacagctacgccttgccaatgcaagacttagccgacgtcgcccag
tcttcgggtttgcagtgggtcaattccaacacggcaaaaattgcccaggtcgccgcagcg
attgcagctgaagccaagcctgtgcatgtaccgcgtatgcgtccagtggccgtcgtcagt
ggcgaaggtccgttagttttggttgaaaccaagcgcgacctgagcgccatggctttgcct
tcagaagacaagccagcggcataa
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