Polaromonas vacuolata: HC248_01004
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Entry
HC248_01004 CDS
T06542
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pvac
Polaromonas vacuolata
Pathway
pvac03030
DNA replication
pvac03410
Base excision repair
pvac03420
Nucleotide excision repair
pvac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HC248_01004 (polA)
03410 Base excision repair
HC248_01004 (polA)
03420 Nucleotide excision repair
HC248_01004 (polA)
03440 Homologous recombination
HC248_01004 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvac03032
]
HC248_01004 (polA)
03400 DNA repair and recombination proteins [BR:
pvac03400
]
HC248_01004 (polA)
Enzymes [BR:
pvac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HC248_01004 (polA)
DNA replication proteins [BR:
pvac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HC248_01004 (polA)
DNA repair and recombination proteins [BR:
pvac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HC248_01004 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HC248_01004 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
QJC55722
UniProt:
A0A6H2H765
LinkDB
All DBs
Position
1055934..1058783
Genome browser
AA seq
949 aa
AA seq
DB search
MSTDKKTLILVDGSSYLYRAFHAMPDLRVTPGDPASPATGAIRGMINMLQKLRKDVRADY
AVCVFDAKGPTFRDDLYPEYKAQRSPMPDDLRSQVDPIHEVVRLLGWTVMTVPGVEADDV
IGTLACMGSQQGIEVIISSGDKDLSQLVDENITVIDTMNDKRRDLAGVEAEFGVPPSLMV
DYQALVGDAVDNVPGVPKVGPKTAVKWLKEYGSLDALVANAAQIKGVVGENLRATLDWLP
KGRELLTIKKDCDLSAYMDGLPALDAAAFLDQDAAALTDFYKTYGFKGLVRQSDAASTQA
ELGAAEQGLKAKSKSKALANPNTPGLFDETSTSDEASTLNDAALAERSSVVHYETIFTWE
AFDQLLATIEAAPLVAVDTETTSLNVMVASIVGLSFSAKPGHAAYIPLTHDYPDAPTQLP
IDEVLARLKPWLENAQKSKLGQHVKYDRHVFANHGIEVKAYAHDTMLQSYVLEVHKPHGL
ASLAERHLGRSGINYEDLCGKGVHQIKFNQVEIAKASEYSCEDSDQTLEVHNVLWPQIEK
DAKLNFVYQLEMQSSESLYRIERNGVLIDGPMLAKQSGELGARILQLEADAHALADQPFN
LSSPKQIGEIFFTKLGLPVIKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGT
YTDKLAQLALPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPVKTAEGRRVREAFVAGPGK
VIASADYSQIELRIMAHLSEDEALLHAFGAGHDVHRATAAEVFGVTLEQVSTEQRRTAKV
INFGLIYGMSSFGLARNLGIETKAAAAYIDKYFQRYPGVKNYMDETRMTAKSQGYVETVF
GRRLYLPEINSPNGPRRAGAERAAINAPMQGTAADLIKLSMNSVQARLDAEQRGTRMIMQ
VHDELVFEVPESEADWVRVEIPRIMASVAELKVPLLAEIGLGPNWEKAH
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgacaaaaaaaccctgatcctggtcgatggatcgagttatctctaccgcgcc
ttccatgccatgcccgacctgcgcgtcacgccgggcgatccggctagccctgcgacgggt
gcgattcgcggcatgattaatatgctgcaaaagctgagaaaagacgtgcgtgccgactac
gccgtgtgtgtctttgatgccaaaggcccgacgtttcgcgacgatctttatcctgaatac
aaagcccagcgttcccccatgccagacgatttgcgcagccaagtcgatcctatccatgaa
gtggtcagactattgggctggacagtcatgacggtacccggcgttgaggccgatgacgtc
ataggaacacttgcctgcatgggctcgcagcaaggcatagaagtgatcatctccagcggt
gacaaggatttaagtcaactggtcgatgagaacatcaccgtcatagacaccatgaacgac
aagcgccgcgacttagctggcgtagaggccgaattcggcgtgccgcccagcctaatggtc
gactaccaagcactggtcggggacgcggtagacaacgtgcccggcgtgcccaaggtcggc
cctaagacggcggtgaaatggctgaaagaatatggctcactcgatgccttggtggccaac
gccgcgcaaatcaaaggcgtagtcggcgagaacctgcgcgccacgttggactggctgccc
aagggacgtgagttgctgacaatcaaaaaagattgtgatctctcggcttacatggacggt
ctgccagctttagacgccgccgcttttctcgaccaagatgccgcggctttgacggatttt
tataagacttatggctttaaaggtttggtccgccaaagcgatgctgctagcacccaggcc
gagctaggcgcagcagagcaagggctaaaagccaaatcaaaatccaaggctttggccaat
ccaaatacgcccggtttgttcgatgagacgtcgacttctgacgaggcttcaacgttaaat
gacgctgcattagccgagcgttctagcgttgtacattacgagacaatttttacttgggaa
gcttttgatcaattgctagccacgattgaagccgcacccttggtcgcggtcgataccgag
actacttcgcttaatgtgatggtcgcgtccatcgtcggtttgagctttagcgccaagccc
ggtcacgccgcctatataccgttaacccacgactatcccgatgcaccgacgcagttgcct
atcgatgaagtgctggcccggcttaaaccttggctggagaatgcgcaaaaatccaagctc
ggccaacacgttaaatatgatcgccacgtttttgccaatcacggcatagaggtcaaagcc
tatgcccacgacaccatgctgcaaagctatgtgctcgaagtgcataagccgcacggttta
gccagtctggccgagcggcatttaggacgcagcggtattaactacgaagacttgtgcggc
aaaggcgtgcatcagatcaagttcaaccaagtcgaaattgccaaggcttctgaatattct
tgtgaagactcagaccagaccttagaggttcacaacgtgctttggccacaaattgaaaaa
gacgccaagctcaactttgtctaccagctcgaaatgcaaagcagcgagtctctataccgc
atagagcgcaatggcgtgctcatagacgggcccatgctggcgaaacaaagcggtgagttg
ggtgcgcgtattttgcagctagaagctgatgcccatgcactggccgatcagccgtttaac
ttgagctcgcccaagcaaattggtgaaatatttttcacaaaactgggtctgccagtgatt
aagaaaacacctagcggcgcgcccagcaccgatgaagaagtgctggaaaagctggcagaa
gactaccccttaccagcgaaaattcttgagcaccgaggtctgtctaaactcaaaggaacc
tataccgataagctggcccaactcgcccttccacgaaccggcagagtgcatacccattac
gcgcaagccgtcgcggtgacggggcggctatcgagtaacgaccccaatttacaaaacata
ccggtcaaaaccgcagaaggccggcgtgttcgcgaagcctttgtggccgggccgggcaaa
gtcattgccagtgctgattactcacaaattgagctacgcatcatggcccacttgagcgaa
gacgaggctttacttcacgcatttggtgccggccatgatgtgcaccgcgccacagcggca
gaagtgtttggtgtcacgctagaacaagtcagcaccgagcagcgccgcaccgccaaggtg
attaattttggtttgatttacggtatgagcagcttcggcttggcacgcaatttggggata
gaaaccaaagccgcagcggcttatatcgacaaatattttcagcgctatccgggcgttaaa
aactatatggacgagacccgcatgacggccaaatcgcaaggctatgtagagaccgtgttt
ggccgcagactgtatttgcccgagatcaattcacccaacggcccacgccgcgccggtgcc
gaacgcgcagcgattaacgcgcccatgcaaggcacggcagctgacttgataaagctaagt
atgaatagcgtgcaagcgcggctagacgccgagcagcgcggcacgcgcatgatcatgcag
gtgcacgatgaactggtgtttgaagtgcccgagtcagaagccgactgggtgcgagtagaa
ataccgcgcatcatggccagtgtggctgaactcaaagtgccgctgttagctgaaattggg
cttggaccgaattgggaaaaagcgcattga
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