Polaromonas vacuolata: HC248_01081
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Entry
HC248_01081 CDS
T06542
Symbol
rhsB
Name
(GenBank) putative deoxyribonuclease RhsB
Organism
pvac
Polaromonas vacuolata
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
Big_2
DUF6531
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-ProteinID:
QJC55798
UniProt:
A0A6H2H7G0
LinkDB
All DBs
Position
complement(1137882..1146212)
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AA seq
2776 aa
AA seq
DB search
MAWIFNKSKNSFVSLFLLSLFRQLASNVQTAVQVIWPKKRQQILSRLAQSQELTPARSRF
AGRHALGFLRLLTGVTGVTSVLGGWGFLVALVQALVLTLMLTLIFALLPLQAAHAAQSTV
FGPKTASISPNAKSVGSMAFADIDVYSPGRDTAGPFTLVIENSSANLPNGKQVRIEIWHN
LVKVASSSDFFSPNGVALASFQKPINARPLRNLVMVKVLGNTPVRFTYKIVAGAAPLPPA
SISLLVPNPLALTNGSSAVLTATLTPAPSSAGSIDLVSSNTAVLTLPNSVAFSAGQTSVA
ISVQAQAVGTASVTASLNGGSASSSTSSSASSSTSSNAIANVNVSPAAPKLMGLLPIQST
LQQGASGQMQLSIAPNQSQDTRVALLSSDSTKVSVQASVTIPAGQTTASFAAQGLAVGNA
QISASLNNAAGLSSASAQVQVVPVPVPPTVVSVLPVTLVLQKGSTAQLVVKLSAAQSSDT
TVALLTRTSGIVSLPASVVVPAGASQVGFNVSALDVGNSLIAARLSLSSSSSSVESAVQV
TPVPAALAGLTPASSSLIVGANGQLLLQLNNAQSSVTTVALAAAPSGIVQLPATVLVPAG
QTQVNLTVTALAVGRADVVATLNGSTQRAGVLVSPLPAAIAEVSPSPLALQEGASGNFTV
RLNAVQSSAVTINLVAANPSLLRAPATFVIPAGVVSQAVSVQALAAGSTQLTVGLNGASL
SVAVNITLPPPRIAALEPATQDLPKGKLGQLRLTLDRAPQAPALVSLVNSNSAALGLPAQ
VTIPAGQLSVDIPMTALSLGQAYLSAALNGSAVNAVVTVVAPEIVGIALTPAAVSVSPGQ
STQVQAMGTYSDGSTQDITASQGTAWTSAAPATATVSAEGRVTGLATGETLLSASQTVLP
TYGNPTPSAVVGQASITVGSPLPLALSAIKTALTTGESVAVSISAPYAAGAQAFVIILSS
NGTAALQYPSSVSINPGLSSVNVNLKATSAGSVVLTASASANANANANANTNTTPFASGQ
LSFSVTDPAPTSITITAVSPNAGAVGSLVTLSGIGFTAPVNGNNSNSNNSNTVTFAGNVP
AVVQSASTAELVVKVPDAAQSGPITVSNSLGSAQSAPFTVLREQDFSFQASPSMLDVIQG
TSASVVLNLASVGTNNFQGLAKLTATGLPAGVTAQFDPPSLSAYQTGRLTLLADSRAALT
SPNANANASANVTLTAQATLNGLPWVRQSSISVRVVSKEGLTGVKGRFVTPAGAGIAGII
ARQDITTNQVVTDAAGNFTLTGLAPGVTTLRFDATPANPLYPIWPFNVTLAANQVLTLTD
WVINAPPTDEQFKQIDNAVQDQQITDDRYPGFAVTMPAGVSIVGWDGVKKPRIAVQRIDP
DKLPVGAPPFPMKEAYQLYFGTPMGGIPSAPIPVTLPNVAEKEPGEKVDIWWFDGSPMGG
TGEWKMAGLGTVSADGKTVSSDPGVGITRFCGVCGLFSLSCPPNPTPPQPCPTCGGQDGT
PANDAGNPVSLFTGQALARSSGLSIGGLAPVQTTLHYNPVDAFNNRAGTVTSFGYGWTFG
YDISFWPMSGEQKRLVMPGGQFVNMVADNTGTGTGNNTKYRPVNDPRYSGAYAQMLSAER
WEVVLKDGTRWQFEPFPGIPGLIRGGPPLFVTKIIDSNGVATSISRQSNGRIQSISGLDG
RGISASYGSNGFVSRLADHTGRHQDYGYTADGRVNQITDPQGRVTQYSYQSLPTFTNPDG
ATACSAEIIDNNHQGITSVLYPSSTTPTRNSYGTDRILKQTTATGETWQFAYRRTGACVV
KLSGQSLPAKVWDYSCRAGQSLASRTCSGGTCTAPEVGTCPDTDSEDNRAAGWRFYGGTV
QEAVVTQPDATTTRSTFNARGVITAFADELGQRSQFIYDPKQQLTKSIDPLGRETKFEYD
ALGNRTATIDPLGHRTETLFTASNKPSQTTRFWLEKPSTQGGVALSYTPIFSSASYDSKG
NLTQTINEVGLQTRLSYSAQGLLSSATLAAQINSPSVPVVSAGVASSIAPAARQISLSYS
NAGDLSLITDREGNDTRLGTDALGRPSSSTNPLGYTSQTEYNVIDQLTTSTNPLGQTSQL
SYDPAGRITAVTNTAGVQIERYSYDSQGRVISKTDALNQSDTFEWGSFSRPIKTTDRKGQ
VTTRSYNERGQVASITTPDKTISFEYDTVGRLSEVRDPSSVNTTKYDAANRITQTDSTTA
AGSHRLQYQYDSLGRVSTRTLSGSGIIKPEVTTYSWDAADRLLGHSSSFGVGTGTGTGAG
AGTGTGTQVHSTSYTYDSAGRLATRKVQAGNQQDLITQAYGYDGLERLSQIKYLKAQGTA
SEQLIEQIDYQYDAAGQRIAKTTLNGNGTGSQDTPMRASFDAANRMRSITFTGTGTGTST
GSSDTSYSLSYDQNGNLTQKQNQLEPNDKTTYAWDANNRLIQMNQSKTISSNIGTAGTTG
TTGNTSSSTSTTVLSASFSYDAFGRRIQSTITQGTQAPTTVQYLYEGAQALGEIRDGKLS
HRLLTGLSLDETIARIAVNGDGNKDAANSRLYLTDALNSVIAQLADDDNANIQNSYAYSP
YGQSQTVGPDSANNPNQYTSRENDNTGLYYYRARYYDPVMKRFVSSDPIGLAGGMNSYSY
VEGDPVNYLDPLGFDRWGDTSANYRYTQKAGKPVDDTTGTALTCFSICVGGANPGPGVTV
TAGQEGGHSRGSAHETGQACDVGKNSNPNLTRSKTEQCFKQCFPASSSWGQEERNHYHMQ
TRPSASGSTGFIPGVH
NT seq
8331 nt
NT seq
+upstream
nt +downstream
nt
gtggcttggatattcaacaaatcgaagaacagttttgtatcgctgtttcttttatcgctg
tttcgtcaacttgcatcgaatgtgcagacggctgttcaagttatatggcctaaaaaaaga
cagcaaatactgtcacggctcgcccagtcacaagaattaacgccagcccgcagccgcttt
gcggggcgccatgcgcttgggtttttgcgcttattgacaggtgtgacaggtgtgacaagc
gtgctgggcggctggggttttcttgtggcgttggtgcaggcgctggtattgacactgatg
ttgacgctgatatttgcgctgctgccgcttcaagccgcacatgccgcgcaaagcacagtc
tttggccccaagacggccagcatcagccccaacgctaaaagcgtgggctccatggctttt
gcggatatcgatgtttactcccccggccgcgacaccgcgggcccttttaccttggttatt
gaaaactcgtccgccaacctgcccaacggcaagcaggtgcgcatcgaaatttggcataac
ttggtcaaagtcgcctcaagcagcgactttttctcgcccaatggtgtggcgctggctagt
tttcaaaaaccgattaatgcccgcccgctgcgtaatttggtgatggtcaaagtgctgggc
aacacgccggtgcgctttacttacaagatcgtggccggcgcggcgccgctgccgcctgcc
agcattagcctacttgtcccgaatcccttggcgttgaccaatggcagcagcgcggtgttg
actgccacccttacgcccgcgcccagcagtgctggcagcattgatttggtctctagcaat
actgctgtgctcacgctgcctaatagcgtcgcttttagcgctggccagaccagtgtcgct
atttccgtgcaagctcaagcggtaggcacagctagcgtgacggctagtcttaacggtggc
agcgcaagttccagtaccagttccagcgcaagttccagcaccagttccaacgcaattgcc
aacgtcaatgtctcccccgcagcgcccaagctcatgggcttgctgcctatccaaagcacg
ctgcagcagggcgcctctggccaaatgcaactgagcattgcaccgaatcaatcgcaagac
acgcgggtagccttgctgagttctgacagcaccaaggtcagcgtgcaggcgagcgtcacc
atccccgcgggtcaaaccacggccagctttgccgcccaaggcttggctgtgggcaacgcc
cagataagcgccagcctgaacaatgctgcaggcctttccagcgcctcggctcaagtgcaa
gtggtgccggtgccggtgccgccgacggtggtgtcggttttgccggtcaccttggttttg
caaaagggcagcaccgcgcagttggtggtcaagctctcggcggcgcaaagcagcgacacc
acggtggctttgctcacgcgcaccagcggcatcgtcagcctgcccgccagcgtggtggtg
cccgccggtgccagccaagtcggctttaatgtcagcgctctggatgttggcaacagcttg
atagctgccaggctcagcctcagcagcagcagcagcagcgtagagtccgctgtgcaggtc
acgcccgtgccggcagcgctagccggtctcacgccagccagcagcagcttgatcgtcggt
gccaatggccagttgctgctccagctcaataacgcccaaagcagcgtcaccaccgtggcc
ttagccgcagcgccttcgggcattgtgcaattgcccgccacggtgctggtgccagcgggg
caaacgcaagtcaacctcaccgtcaccgcactggccgtgggccgggcggatgtagtggcc
accttgaatggttcgacccagcgcgccggcgtgctggtctcgcccctgccggctgcgatt
gccgaggtgtcgcccagtcccttggctttgcaagagggcgctagcggcaacttcacggtg
cggctcaacgcggtgcaaagcagtgctgtgactatcaatttagtcgccgccaaccccagc
ttgctgagggcgcctgcgacatttgtgatacccgctggcgtggtgtcgcaggcggtcagc
gtgcaggcgctggctgctggcagcacccaactcactgtcggcctgaatggcgcaagcctt
tcggtggcggtcaacatcacgctgccgccgccgcgcattgcggcgctagagccggctacg
caagacctgcccaaaggcaagctcggccaactgcggctcaccctagaccgcgccccccaa
gcgccggccttagtgagcctggtcaacagcaacagcgccgccttgggcctacccgcgcag
gtcacgattcctgcgggccagctcagcgtagacattcccatgacggcgctaagcctaggc
caagcctatctgagcgccgccctcaacggcagcgctgtcaacgcagtggtcaccgtcgtc
gcccctgagatcgtgggcattgcgctcaccccggctgccgtgtcggtctcgcccggccaa
agcacgcaagtccaagccatgggcacttactcggacggcagcacccaagacatcaccgcc
agccaaggcacggcttggactagcgctgcgccggccaccgccacggtcagcgcagaaggc
cgcgtgacgggcctggccaccggcgagacgctgctaagcgccagccaaaccgtgttgccc
acctacggcaaccccacgcctagcgcagtggtcgggcaagctagcatcacagttggcagt
ccattgcctttggccctctcggcgattaaaacggcgctgaccacgggtgagagcgtcgcg
gtcagcatcagtgcgccgtatgctgctggcgcacaagcttttgtgattattctctctagc
aacggcaccgccgccctgcaataccccagcagcgtgagcatcaaccccggtctgagcagc
gttaatgtcaacctcaaagccactagcgccggcagcgtagtgctgactgccagtgccagc
gctaatgccaacgccaacgccaacgccaacaccaacaccacgccattcgcgtctgggcag
ctcagctttagcgtgaccgaccccgcccccaccagcatcactatcaccgccgtctcaccc
aacgctggcgcagtcggctctctggtcacgctcagcggcattggctttaccgcaccagtc
aatggcaacaatagcaacagtaataacagcaacaccgtcacctttgccggcaacgtgcca
gctgtggtgcagtcagccagcacggcagagttggtggttaaagtgcctgacgcggcgcag
tccggccccatcaccgttagcaacagcttgggctcagcccaaagcgcgccgttcactgtg
ctgcgcgagcaagacttcagcttccaagccagcccgtctatgctggatgtgattcaaggc
accagcgccagcgtggtgctcaacttggccagcgtgggcacgaataattttcaaggtttg
gccaaactcaccgccactggcctgccagccggcgtgaccgcgcagttcgatcccccatcg
ctaagcgcctaccaaaccggccgcctgactttgctagccgatagccgcgcggcattaact
agtcccaacgccaatgccaatgccagtgccaacgtcaccctcacagcccaagccacttta
aacggcctgccgtgggtacgccaaagcagcatcagcgtgcgcgtggtcagcaaagagggg
ctcaccggtgtcaaaggccgctttgtcacacctgctggcgcaggcattgccggcatcatc
gcccgccaagacatcacaaccaaccaagtcgtcaccgatgcggccggtaacttcaccctc
actggcctggcccccggtgtcaccacgctgcgctttgatgccacgcccgctaatccgctc
tacccgatctggccgtttaatgtgacgttagccgccaatcaagtcttaaccctcaccgat
tgggtcatcaacgcaccgcccaccgacgagcaattcaaacaaattgataacgccgtccaa
gaccagcaaatcaccgacgatcgctaccccggctttgccgtgaccatgcccgctggcgtg
agcattgtcggctgggatggcgtcaaaaaaccccgcatcgcggtgcaaagaatcgacccc
gacaagctccccgtgggcgcaccgccattccccatgaaagaggcttatcagctctacttt
ggcacacccatgggcggcatccccagcgcgccgattcctgtcacactgcccaacgtcgcc
gagaaagagcccggcgagaaggtcgacatctggtggtttgatggcagccccatgggcggc
accggcgagtggaaaatggccggcctaggcactgtcagcgcggacggtaaaaccgtctcc
agcgaccccggcgtaggcattacccgcttttgcggtgtctgcggcttgttcagcctgagt
tgtccgcccaacccaacgccgccccagccttgccccacctgcggtggccaagacggcacg
ccggccaacgacgccggcaacccggtgagcttgttcaccggccaagcgctggcgcgcagc
agcggcttatcgattggcggtctggcgccggtacaaactactctgcactacaacccagtc
gacgcctttaacaaccgcgccggtacggtgaccagctttggctatggctggacgtttggc
tacgacattagcttttggcccatgagcggcgagcaaaaacgcttggtgatgccgggtggt
cagttcgtcaacatggtggccgataacacaggcacaggcaccggtaacaacaccaaatac
cgcccagtaaacgacccacgctacagcggcgcctacgcccagatgctcagcgccgagcgc
tgggaagtggtgctcaaagacggcacgcgctggcagttcgaaccctttcccggcatcccc
ggcctaattcgcggcggcccaccgctgttcgtcaccaaaatcatcgacagcaacggtgtt
gccaccagcatcagccgccaaagcaatggccgcattcaaagcattagcgggctggacggg
cgcggcatcagcgccagctatggcagcaacggttttgtctcgcgcctagccgaccacacc
ggccgccaccaagactacggctacaccgccgatggccgggtaaaccagatcaccgacccc
caaggccgggtgacccagtacagctaccaaagcctgcccacattcaccaaccctgacggc
gcaaccgcctgtagcgccgagatcatcgacaacaatcaccaaggcatcacctccgtcctc
taccccagctcgactacgcccacacgcaacagctacggcaccgaccgcatcctcaaacaa
accaccgccaccggcgagacctggcagtttgcttaccgccgcaccggcgcctgcgtagtc
aagctaagcggccaaagcctgcccgccaaagtctgggattacagctgccgcgccggccag
tcattggccagccgaacctgcagtggcggcacctgcacagcgccagaagtcggcacctgc
cccgacaccgactctgaagacaaccgcgccgcaggctggcgtttctacggcggcacggtg
caagaagccgtcgtgacccagcccgacgccaccaccacccgctccaccttcaacgcccgc
ggcgtgatcaccgcgtttgctgacgagttgggtcagcgcagccagttcatctatgacccg
aaacagcaactcaccaaaagcatagaccccttgggccgcgagacgaagtttgaatacgac
gccctcggcaaccgcaccgccacgattgaccccctaggccaccgcaccgaaaccctgttt
acggccagcaacaaacccagccaaaccacccgtttctggctagaaaagcccagcacccaa
ggcggcgtagcgctgagctacacaccgattttttctagcgctagctacgacagcaaaggc
aatctgacgcaaaccattaacgaagtcggcctgcaaacccgccttagctacagcgcccaa
ggcctgctcagcagcgcaacactggccgcacaaattaacagccccagcgtgcccgtcgtc
agcgcaggcgttgccagcagcatcgccccagcagcccgccagatcagcttgagctacagc
aacgcaggcgacttaagcctcatcaccgaccgagaaggcaacgacacgcgcctcggcacc
gacgccctaggccgtcccagcagcagcaccaacccgctcggctacaccagccagacggag
tacaacgtaatcgaccagttaacgaccagcaccaacccactaggtcaaaccagccagctg
agctacgaccccgcagggcgaatcacagccgtcaccaacaccgccggcgtgcaaattgag
cgctacagctacgacagccaaggccgcgtaatcagcaaaaccgacgccctaaaccagagc
gacacgtttgagtggggcagtttcagtcgcccaatcaaaaccacagaccgcaaaggccaa
gtcacaacccgcagctataacgagcgcggtcaagttgccagcatcaccacgcccgacaaa
accatcagctttgagtacgacacagtcgggcgcttgagtgaagtgagagaccccagcagc
gtcaacaccaccaaatacgacgccgccaaccgcatcacccaaaccgacagcaccacagcc
gccggcagccaccgcctgcaataccagtacgacagcttaggcagagtcagcacccgaacg
ctcagcggcagcggcatcatcaagccagaagtcaccacctacagctgggacgcagcagac
cgactgctgggccacagcagcagctttggcgtaggcacgggaacgggcacgggagcagga
gcaggcacaggcacaggcacccaagtccacagcaccagctacacctacgacagcgccggc
cgcctagccaccagaaaagtccaagccggcaaccagcaagacctcatcacccaagcctac
ggctacgacggtttagagcgcttaagtcaaatcaaatacctcaaagcccaaggcacagcc
agcgagcaattgatagaacaaatcgactaccagtacgacgccgcaggccagcgcatcgcc
aaaaccaccttgaacggcaacggcacaggcagccaagacaccccaatgcgcgccagcttc
gacgccgccaatcgcatgcgcagcattactttcaccggtactggtactggtacaagcaca
ggcagcagcgacacaagctacagcctaagctacgatcaaaacggcaacctaacgcaaaag
caaaaccagcttgaacccaacgacaaaaccacctacgcttgggacgcaaacaaccgcctg
atccagatgaatcaaagcaagaccatcagcagcaatatcggcaccgctggaaccactgga
actactggcaataccagttccagcaccagcaccacagtactaagcgccagcttcagctac
gacgccttcggccgaagaatccaaagcaccatcacgcaaggcacccaagcccccaccaca
gtccaatacctgtacgaaggcgcgcaagccttgggtgaaatcagagatggcaagctaagc
cataggttgctgacaggtttgagtttggacgaaacaatagccagaatcgccgtcaatgga
gacggcaacaaagacgcagcgaatagccgcctttacttaaccgacgccctcaatagcgtg
atcgcgcaattggctgatgatgacaacgcgaatattcaaaacagctacgcctacagccct
tacggccaaagccagacggttggcccagacagcgccaataatccgaaccaatacaccagc
agagaaaacgacaacacggggctttattactatcgggcgcggtactacgacccggtgatg
aagcggtttgtgtctagtgatccgattgggttggctggggggatgaatagctacagctat
gtggagggggatcctgtgaattatttggatccattggggtttgacagatggggtgataca
tcggctaattatcgatacacacaaaaagcaggaaaaccggtagacgacacaacaggtact
gcgctgacatgtttttcgatatgcgttggaggagcaaatcctgggcctggtgtaaccgtt
actgctggtcaagaaggcggtcatagccgaggaagtgcgcatgaaacaggccaagcatgc
gatgtgggcaaaaactctaatcctaatttaacgcgttcaaaaactgaacaatgctttaaa
caatgttttccagcatctagcagttgggggcaagaagaacgtaaccattaccacatgcag
acacgtccctcagccagcggtagcactggatttataccgggggtgcattga
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integrated database retrieval system
