Polaromonas vacuolata: HC248_01105
Help
Entry
HC248_01105 CDS
T06542
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pvac
Polaromonas vacuolata
Pathway
pvac03030
DNA replication
pvac03430
Mismatch repair
pvac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HC248_01105 (dnaE)
03430 Mismatch repair
HC248_01105 (dnaE)
03440 Homologous recombination
HC248_01105 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvac03032
]
HC248_01105 (dnaE)
03400 DNA repair and recombination proteins [BR:
pvac03400
]
HC248_01105 (dnaE)
Enzymes [BR:
pvac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HC248_01105 (dnaE)
DNA replication proteins [BR:
pvac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HC248_01105 (dnaE)
DNA repair and recombination proteins [BR:
pvac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HC248_01105 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Histone_HNS_N
Motif
Other DBs
NCBI-ProteinID:
QJC55822
UniProt:
A0A6H2H7G5
LinkDB
All DBs
Position
1174244..1177774
Genome browser
AA seq
1176 aa
AA seq
DB search
MFVHLRIHTEFSVVDGTNRIDEIVPAAAADGQPALAITDLSNLFATIKFYKQGHKSGVKP
LIGADLWVQVPGKDAASPPARLLLLVQNHRGYLNLSELITRAWTLGVVREQAIVSLAWLE
ELSEGLICLSGAQRGAVGQALVQGDDGRAMDCALLLAGIFPHRFYIELQRAEQADDARHV
PAAVQLAARLHLPVVATHPVQFLSYDDYEAHEARVCIAEGEILGNIRRIRKFTREQYFKS
SSQMEQLFADIPSAIANTLEIAKRCNLTLDLGKPMLPDYPTPEVNGAHMTADEYFRYASF
EGLEQRLLHLYPDAVLRDNKRPEYAARLEFEIKTILNMGFPGYFLIVGDFINWAKKNGCP
VGPGRGSGAGSLVAYSLKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQTNRDRVIDY
VKDKYGHQAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQAVTLQLVP
AERKKGDKLVYALEAEPILAERERKEEDVHTLLELARKLEGLTRNVGMHAGGVLIAPGKL
TDFCPLYLQPGSSSAVSQFDKNDVEAIGLVKFDFLGLATLTILEMAKDFIIARHPSQSDF
NFENLPINDARVYALFARGQTEAVFQFESSGMQRMLKDAKPDRLEDLIAMNALYRPGPMD
LIPTYIARKQGREVPEYPDPRVKPMLEETYGIMVYQEQVMQTAQILGGYSLGGADMLRRA
MGKKDEKEMASQREIFRKGAGINGLTLEKADEVFDLMEKFAGYGFNKSHSAAYALLAYHT
AWLKVHYTAEFFCANMTVEMGDTDKLKILFGDAQKMGISFESPDVNRGQYRFEPITSSSI
RYGLGAIKGTGQQAIAAIVAARESGGVFTSLYDFCVRVDRARLNKRTVEALIKAGAFDNL
HLNRAALSASIDRAFEFAAALEANANQGGLFDMDSHAASTQEPPLVEAIPLGVKARLVLE
KTAIGFYLSGHLFDEVEREVRQFAKRKIEDLIDSRDQQLIAAIVTDLRVINGQRGKLALF
KLDDKTAMIEATADEAVLNANRHLLKDDELVIVQCVLQPDRFSGGFRLKVTQVWDLETAR
CKFGKYLRVTVASKAPDFARMARDFPPRLEASDLGDVVRGLPVRLSLTRSVDFAAGSGSV
CAELMLGDKSKFLPTDAALASWMAQAGQGQAEIVYE
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcatttacgtatccacaccgagttctcagtcgtcgatggcacgaatcgcatt
gacgagatagttcccgccgccgcagccgatggccagcccgcactagcgattaccgattta
agcaatctttttgccaccataaagttttacaagcaaggccataagtccggcgttaagccc
ttgataggtgctgatctctgggtgcaagtgccgggcaaagatgctgccagtccacccgcc
cgcttgctgctactggtgcaaaaccaccgcggctaccttaatctgtctgagctaattacc
cgcgcttggacgctgggtgtggtgcgtgagcaggcgattgttagtcttgcctggttagaa
gagctaagcgaaggcttgatttgtttgtctggcgctcagcgcggcgccgtcggtcaggcc
ttggtgcagggcgacgatggccgcgccatggactgcgcgctgctgctcgctggcattttt
ccgcaccgcttttacatagaactgcaacgcgccgaacaggccgatgatgcgcgtcacgta
cctgccgctgttcaattggcggcacgcctacatttgccggtagtggcgacgcatccggtt
cagtttttgagctatgacgactatgaggcgcatgaagcccgagtctgcattgccgagggc
gaaattctgggcaacatacgccggattcgtaaattcacacgcgagcagtacttcaagtcg
tccagccaaatggagcagttgtttgccgacattccctcggccatcgccaacaccttagaa
attgccaagcgctgtaacttaacgctcgatctgggcaaacccatgttgcccgactacccg
acgccggaagtcaacggtgcgcacatgacggcggacgagtattttcgctatgcctcattt
gaaggcctagagcagcggctgctacacctctatcccgacgcggttttgcgcgataacaag
cggcccgagtatgcggcgcgtcttgagtttgaaatcaaaacgattttgaacatgggcttt
ccgggttactttttaatcgttggtgactttattaactgggccaagaaaaatggttgcccg
gtcgggccgggacgcggctcgggggctggctctttggtggcgtattcgctcaagattact
gacctagatccattgcagtacaacctgttgttcgagcgattcctcaatcccgagcgggtg
tcaatgcccgactttgatattgatttttgccagaccaatcgcgaccgcgtgattgattat
gtcaaggataaatacggtcaccaagcagtcagccagatcgtgacttttggcaccatggcc
gcacgcgcagcgattcgcgatgttggtcgggtgctggactttccctacggtttttgcgat
ggaatttctaagctcattcccaacaagcccggccaagccgtcaccctgcaactggtgccc
gccgagcgtaaaaaaggcgataagctggtttatgcacttgaagctgagccgattctggct
gagcgcgaacgcaaagaagaagacgtgcacacgctcttggagttggcgcgaaaactagaa
ggcctgacccgcaacgtcggcatgcatgccggcggcgtgctgattgcgccgggcaagctg
actgatttttgcccgctgtatttgcagcccggcagcagctcagcggtgagtcagtttgat
aaaaacgacgtagaagccattggtctggtgaagtttgactttttaggtttggcgacgctg
actattttggagatggccaaagacttcatcattgcgcgccacccctcgcaaagcgacttt
aattttgagaatctgccgattaatgatgcgcgggtttatgcgctgtttgcgcgtggccag
accgaagccgtgtttcagtttgaaagtagcggcatgcagcgcatgctcaaagacgccaag
ccggaccgcttagaagacttgatcgcgatgaatgcgctctaccgtcccgggccaatggat
ttgataccgacttacatcgcccgtaagcaaggccgcgaggtgcctgagtatccagacccg
cgggttaaacccatgctggaagaaacctacggcatcatggtctaccaagagcaggtgatg
caaacggcgcagattttgggcggttattcgttgggcggcgccgacatgctacgccgcgcc
atgggtaaaaaagacgagaaggaaatggccagccagcgcgagattttccgcaaaggcgca
ggcattaacggcttgacgctagaaaaagccgatgaggttttcgacttgatggaaaagttc
gcgggctacggctttaacaagtcgcactcggccgcttatgcgctgctggcttatcacacg
gcatggctgaaagtgcattacaccgcagagtttttctgcgccaacatgacggtcgagatg
ggggacactgacaagctcaagatcttgtttggcgatgcgcaaaaaatgggcattagcttt
gagtcgccggatgtgaaccgcggtcaataccgctttgagccgattacttctagcagcatt
cgttacggtctgggcgcaatcaagggcactggccagcaagcgattgccgcgattgtggcg
gcgcgtgaaagtggtggggtgtttacttcgctctatgatttttgcgtgcgggttgaccgc
gcacggttaaataaacgcacggttgaggctttgattaaagccggtgcttttgacaatctg
catctaaaccgtgcagccctcagcgcgtccatagaccgggcgtttgagttcgcagccgca
ctagaagccaacgccaaccaaggcggcttgttcgatatggattcgcatgcggccagcaca
caagagccgcctttggtcgaagccataccgttgggtgtaaaagcccgcttagtgctggag
aaaaccgcgattggtttttatctttccggccatttgtttgatgaagtcgagcgcgaagtg
cgccagtttgcgaaacgcaaaattgaagacttaatcgattcacgagaccagcaattaatc
gccgcaatagtgactgatttgcgggtgattaacggccagcgcggcaagttggcgctgttc
aaactcgatgacaagacggcgatgattgaagccactgccgacgaggctgttctcaacgcc
aaccgccatttgctcaaagatgatgagttggtgattgtgcagtgcgtgttgcagccagat
agattttctggtggctttaggctcaaagtcactcaggtctgggacttggagacggcgcgt
tgcaagttcggtaaatacctgcgcgttaccgtcgctagcaaagccccggactttgcccga
atggcacgcgactttccgccgcgcttagaagcatctgatttaggggatgtcgtgcgtggt
ttacccgtgcgactgagcttgaccaggtcagttgattttgccgccggttcaggatcggtt
tgtgccgaactgatgctgggtgataagtcaaaatttttaccgacggatgcggcgctggct
agctggatggcgcaagccgggcaggggcaggctgagattgtttatgagtaa
DBGET
integrated database retrieval system
