Polaromonas vacuolata: HC248_01326
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Entry
HC248_01326 CDS
T06542
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvac
Polaromonas vacuolata
Pathway
pvac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HC248_01326 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvac03400
]
HC248_01326 (mfd)
Enzymes [BR:
pvac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HC248_01326 (mfd)
DNA repair and recombination proteins [BR:
pvac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HC248_01326 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
HAAS
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QJC56042
UniProt:
A0A6H2H829
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All DBs
Position
complement(1448576..1452109)
Genome browser
AA seq
1177 aa
AA seq
DB search
MRNKHLVTKTSGQQDHMEIPKLTPGKRYTLPQPVGSADTLLIAKLGLREKAAGRPTAVIT
SDAATAQRLLAEIAFFAPDLRCALFPDWETLPYDSFSPHQDLISERLATLWRISQRDREL
GADLIIVPATTALYRLAPPSFLAGYTFEFKVKQKLDEARLKAQLTLAGYSHVTQVVSPGE
YAVRGGLIDLFPMGSLVPFRVDLFDDEIDSIRTFDPDSQRSLYPVPEIRLLPGREFPMDN
DARTRFRSRWRELLEGDPTKSRIYKDIGNGVATAGIEYYLPLFFDDTATVFDYLGSDATV
VLHGDLEPAFQRFWQDTKDRYRLVKDAPDRPALPPESLFLSAEQFYARANAYAQLALKSG
IEDVADNAQFQKLGEMAVVRGAEDPLAKLKSHIRNTPQRVLLLAESDGRRESLLDFLRAS
GVSPPAFDSLIDFQTSSEKLGIATSAMGQGFSWLEGDIDFVTETELFAAGISVRRRNKKQ
EQVSDVEALIKDLSELNLGDPVVHSAHGIGRYVGLINLDLGMGKNPDGSPVMQEFLHLEY
ADAATLYVPVSQLHHISRYTGVSAEEAPLHRLGSGQWEKAKRKAAEQVRDSAAELLNIYA
RRAARQGHAFRYSPGDYETFANDFGFDETADQSAAIHAVIQDMISPRPMDRLVCGDVGFG
KTEVALRAAFIAITGGKQVALLAPTTLLAEQHYQTLVDRFAKWPVKVAELSRFRSAKEIT
AAIKGIADGTIDIVVGTHKLLSKDVKFERLGLLIIDEEHRFGVRHKEAMKSMRAEVDVLT
LTATPIPRTLGMALEGLRDLSIIATAPQRRLAIKTFVRSESRGVIREAVLRELKRGGQVY
FLHNEVETIQNRREMLEVLLPEARIAVAHGQMPERELERVMKDFVAQRYNLLLCSTIIET
GIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIESLTKRASQRLDAI
QQMEELGSGFYLAMHDLEIRGTGEVLGENQSGNMMEIGFQLYNEMLNEAVASLKAGREPD
LLSPFNVTTEINLHAPALLPSDYCGDVQLRLSFYKKLATAKTTAQIDSLLEEIVDRFGKL
PAQAQTLIDVHRLRVIARNYGVLKVDAAPGVINITFKKEPPIEPLAIMHLIQKNRHIKLA
GNDKLRIERELPEAKDRAQMVRDVLRSLGKPVEIAAV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaacaaacacttagtcactaagacatcgggacaacaagaccacatggagattcca
aaactcacccccggcaaacgctacaccctgccacagcctgtgggttcagccgataccttg
ctaattgccaaacttggcctgcgcgagaaagccgccggaaggccaacagcagtcatcacc
tcagacgccgcaaccgcccagcgcctgctagctgagatcgcttttttcgcacccgatctg
cgctgcgcgttgttccctgattgggagaccctgccctacgacagtttctcgccgcaccaa
gacctgattagcgagcgcctagcgacgctctggcgcatctcgcagcgcgaccgcgaactc
ggcgccgacttgattattgtccccgccaccaccgcgctttaccggcttgcaccgcccagc
tttttggccggctatacgtttgaatttaaggtcaaacaaaagttagatgaagcccgtctt
aaagcccagctaacgctggcgggatacagccacgtgacccaagttgtgagtccgggcgag
tatgcggtgcgcggcggcttaatagacttatttcccatgggctcgttggtgccgtttcgc
gttgacctgtttgacgatgaaatcgactcgatacgaaccttcgacccagacagccagcgc
agcctttacccagtgccagaaattcgtttgttaccgggccgagagttccccatggacaac
gatgcccgcacccgttttcgcagccgctggcgcgagttgcttgaaggagatccgaccaaa
agtcgtatctacaaagatattggcaatggcgtagcgacagccggtatcgagtattacttg
ccactgtttttcgatgacacggccacagtttttgactacctcggcagcgacgcaaccgtc
gtattacacggcgacttagaaccggcttttcaacgcttttggcaagataccaaagaccgt
taccgcttagtcaaagatgcgcctgaccgcccagccctgccgcccgaatccttattcctt
agcgccgagcagttttacgcgcgcgccaatgcatatgcgcaactagccctcaagtccggc
attgaagacgtagccgataacgcacagtttcaaaaactcggcgaaatggccgtggtgcgc
ggcgcagaagaccctctggcaaaactcaaaagccatattcgcaacacaccgcagcgtgtg
ctgctgctggccgaaagcgatggccggcgcgaaagtctgctggactttttacgcgccagc
ggcgttagtccacccgcttttgactcactgattgattttcaaaccagcagcgaaaagcta
ggcattgccacttccgccatgggtcaaggctttagctggcttgaaggcgacatcgatttc
gtcactgaaaccgaattatttgccgccggcatcagcgtgcgcagacgcaataaaaagcaa
gagcaagtcagcgatgtagaggccttgatcaaggacttgtccgaactcaatttgggcgat
ccagtcgtgcacagcgcccacggcattggccgctatgtaggcctgatcaatcttgattta
ggtatgggaaaaaatcccgatggctcgcccgtgatgcaagagtttttgcacttggaatac
gctgacgccgccaccctttatgtgccggtcagccaactccaccacatcagccgctacacc
ggcgtcagcgctgaagaagcaccattgcaccgcttaggcagcggccagtgggaaaaagcc
aaacgcaaagccgcagaacaagtgcgcgactcagctgctgaattactgaatatttatgcg
cgccgcgcggcccgccaaggccatgcatttcgctactcaccgggcgactatgaaaccttt
gccaacgactttggctttgatgaaacagccgaccaaagcgccgccattcatgcagtgatt
caagacatgattagcccgcgcccaatggacagactggtctgcggcgatgtgggttttggt
aaaactgaagttgccttacgggccgcgtttatcgccatcacaggcggcaaacaagtcgct
cttttagcacccaccacattactcgccgagcagcattaccaaaccttggtagaccggttt
gccaagtggccggtaaaagtcgctgagttaagccgttttcgatcagccaaagaaatcact
gcggcgattaaaggcattgcggacggcaccatagacatagtcgtgggcacgcacaaactg
ctcagcaaagatgtgaagtttgaacgcctaggcttgctcatcatcgacgaagaacaccgc
tttggcgtgcgccacaaagaggccatgaaatccatgcgcgccgaagtcgatgtgctcacg
ctaactgccacaccgattccgcgcaccttgggcatggccttagaaggactcagagactta
agcataatcgccaccgcaccacagcggcgcttggccatcaaaacctttgtgcgcagcgaa
agccgcggcgtgattcgcgaagccgtgctgcgcgaactcaaacgcggtgggcaagtttac
tttttgcacaacgaagtcgagacaattcaaaaccgccgcgaaatgcttgaagtgttgcta
cccgaagcccgcatcgcagtagcccacggccaaatgccagaacgcgaactcgaacgtgtg
atgaaagacttcgtcgcccaacgctacaacctgctgttgtgctcaacgattatcgaaacc
ggtatcgacgtgcctaccgccaacaccatcgtcatgagccgcgccgataaattcggccta
gcccagctacaccaattgcgcggccgagttggtcgcagccatcaccaagcctatgcttat
ttgatggtgcccgatatagagagcttgaccaagcgggctagccagcggttagacgccatt
cagcaaatggaagagttgggatcaggcttttacttagccatgcacgatttagaaattcgc
ggcactggcgaagtgcttggcgagaaccaatccggcaacatgatggagattggctttcag
ctttataacgagatgctaaacgaagccgtggcatcactcaaagccggacgcgagccagac
ctgctatcgccattcaatgtcacaaccgagatcaatcttcacgcaccagccttgctgcca
agcgactattgcggcgatgtgcaactgcgtttgagcttttacaaaaagctggcaacggcc
aaaaccacggcgcaaatcgattcactgttagaagaaatcgtcgaccgctttggaaaactt
cctgcacaagcccaaaccttaatagacgtacataggctgcgcgtgattgcgcgaaactac
ggcgtgctcaaagtcgatgcagcaccgggcgtgatcaacatcacgtttaagaaagagccg
ccaattgagccgctagccatcatgcatttgatacaaaaaaaccgccacatcaaactcgct
ggcaatgacaaactgcgcattgaacgcgaactgccagaagccaaagacagagcgcaaatg
gtcagagatgtgctgcgcagtttgggtaaaccggtggagatcgcagcggtttaa
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