Polaromonas vacuolata: HC248_01454
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Entry
HC248_01454 CDS
T06542
Symbol
sbcC_2
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pvac
Polaromonas vacuolata
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvac03400
]
HC248_01454 (sbcC_2)
DNA repair and recombination proteins [BR:
pvac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HC248_01454 (sbcC_2)
Archaeal homologous recombinant proteins
HC248_01454 (sbcC_2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
Motif
Other DBs
NCBI-ProteinID:
QJC56168
UniProt:
A0A6H2H8H0
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All DBs
Position
1580130..1582322
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AA seq
730 aa
AA seq
DB search
MFEKKQIFNQRREQVVTALALWMRIHTQKTNSNQLEQQSQTQLVSVSKIESELQAAQALA
PMLARDCASVEQTLQIAQLVASESAEGLREQLQAGLACPVCGGLEHPYAVHLPYQDAALI
ALKNNVTNKRNESQALITRIGILSSTLSSAQTQLEQLSATRLVSDNTTLKFQAEWVQHAM
RAELVLVAENDIQVCLDSALVVITSHLEKLTAQEIGFQKALQEKETLQVAKDKSQLALQS
QKETFDSLTQEQKINHQALQSVVQQIAELTPQIESTLLLISNGFVDARWQESWRQDASTF
VAQCKKDVFSWNSKQKNSVEFFSHIQLLGNALESLTLALKKNIQTLTDQSDQCSHQELVL
QIIREKRKALFDGKSTQDIEANFNNAVALARQAQTNFQLLSQQSSSQHTRLVEVTRQSVA
QVVSSNYELSQAQTNFDVWCDSFQSRTDVAELGTSCSLEHLQRWLDVPLAWAVTERIELQ
EIDTALASAQAVLTQQSLNLTRHQAVCSTSEDVLSVANKLSELEKTLLAVSEALTALRIA
LAEDDKRLGATNDLRLKIQLQSTRTDLWARLGELIGSADGKKFRNFAQQMTLDILLGYAN
SHLQSLTKRYRLQRIKNSLGLLVVDQDMGDEVRSVHSLSGGESFLVSLALALGLASLSSH
QVRVESLFIDEGFGSLDADALLLAMEALDKLQAQGRKVGVISHVQEMTERINTRVQVQRM
AGGVSKVVVS
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaaaaaacaaattttcaatcagcggcgtgaacaagtcgtcactgcgcttgcg
ttgtggatgagaatccatacgcaaaagacaaattcaaatcagcttgagcagcagtctcaa
actcaattagtcagtgtctcaaaaatcgaaagtgaacttcaagctgcgcaagctttagcg
cctatgttggcgcgtgattgcgcatcggtagagcaaacgttgcaaattgcacaattggta
gcgagtgaaagcgccgaaggtttgcgggaacaactgcaagcgggtctggcctgtccggtg
tgtggtggacttgagcatccttatgctgtccatctcccgtatcaagacgctgccttgata
gcgttaaaaaataatgtgacaaataaacgcaatgagagccaagcgctgatcacccgtata
ggtattttatcaagcacactttcatctgctcaaacccaacttgaacaactcagtgctaca
cgtcttgtgtcggataacactacgcttaaatttcaagcggaatgggttcagcacgctatg
cgtgctgagcttgtactggttgctgaaaatgatattcaagtctgcttagattcggcttta
gttgttatcacctctcacttggaaaagttgactgctcaagagattggttttcaaaaagcg
cttcaggaaaaagaaacgcttcaagtcgccaaagataaatctcaattggcattacaaagt
caaaaagagacgtttgattcgctaacgcaagaacaaaaaattaatcaccaagcactgcaa
tccgttgtgcagcagatagccgaattaacgcctcaaatcgaaagcacactactgctaatt
agcaacggttttgtcgatgcacgctggcaagaaagctggagacaggacgccagcactttt
gtagcgcaatgtaaaaaagatgtgtttagctggaatagcaaacaaaaaaattcagttgaa
ttttttagtcacattcaactgctgggtaatgcgcttgaatccttaactttggcgcttaag
aaaaatatccaaaccttgacggatcagagcgatcaatgcagccaccaagaattggtttta
caaatcattcgggaaaagcgtaaagcattgtttgacgggaaaagcacgcaagacattgag
gcgaattttaataatgcagtagctttagcgcgtcaggcacaaactaattttcaattactt
agccagcaatcgtctagtcagcacactcgtttggttgaagtgacgcgtcaaagtgttgct
caggtagttagcagtaactatgagttgtctcaagcgcaaactaattttgatgtgtggtgc
gactcatttcaatctcgcactgatgtcgctgagctaggtactagttgctcacttgagcac
ttgcagcgttggttagatgtcccactggcttgggcagtgacagagcgcattgaactgcaa
gaaattgacactgcgcttgctagcgctcaagcggtgttgactcagcaaagtctgaacttg
acccgccatcaagcggtctgctccacatccgaggatgtgcttagcgttgctaataaattg
tctgaattagagaaaactttgttagccgttagcgaagccttaactgctttacgaattgca
ctggccgaggatgacaagcgcttgggcgctaccaatgacttacgtctaaaaattcaattg
caatcgacgcgtacagatttgtgggccagacttggtgaattgattggctctgccgatggt
aaaaagtttcgcaactttgcccaacaaatgaccttggatattttgctgggttatgccaat
agtcatctgcaaagtctgaccaagcgctaccgtttgcaacgcatcaaaaactctttgggc
ttgctagtcgtcgatcaagacatgggcgacgaagtgcgctctgtgcattctttgtctggc
ggcgaatcatttttggtctcattggcactggcgttgggcttggcatcgctgtcatcgcat
caagtgcgtgtcgagtcattgtttattgatgaaggttttggcagtttggatgccgatgct
ttgctgctggccatggaggctttggataagctgcaagctcagggtcgcaaggtcggcgtg
atctcgcatgtgcaggaaatgactgagcgcatcaacacccgcgttcaagttcagcgtatg
gcgggcggagtcagcaaggtcgtggtgagttaa
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