Polaromonas vacuolata: HC248_01555
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Entry
HC248_01555 CDS
T06542
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pvac
Polaromonas vacuolata
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvac03009
]
HC248_01555 (rlmD)
Enzymes [BR:
pvac01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HC248_01555 (rlmD)
Ribosome biogenesis [BR:
pvac03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HC248_01555 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
RrnaAD
TRAM
MTS
Methyltransf_11
TPMT
PCMT
Motif
Other DBs
NCBI-ProteinID:
QJC56253
UniProt:
A0A6H2H8Y3
LinkDB
All DBs
Position
complement(1690337..1691839)
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AA seq
500 aa
AA seq
DB search
MSEETQSPKSPQSTVQSTAQSTAPKEYPLDLLSIESLDIEAQGIAHRPDGKVVFIEGALP
FELVSASVYRKKASFEKATLLAVHRESSQRVRPACPSFGMHTGACGGCKMQHLHVSAQVA
VKQRVLEDNLLHIGKLKSDNLLRSIEGPAWNYRYRARLSVRYVRKKGTVLVGFHERKSAY
VADMSECHVLPKHVSDMLLPLRALISSMDAKETIPQIELACGDSVTALVLRHMQDLSDTD
LTRLRAFAVQTPGVQWWLQSGGLETVVLLDDATEELNYGLPEFGVVMPFRPTDFTQVNPH
INQVLVSRALRLLAVQPHERVIDWFCGLGNFTLPLATRAQSVLGIEGSEALVARSRENYL
KNQAARIDRHALAPTSFEVRNLFEMTPALLSRDGRADKWLVDPPREGAFELFKSLAALHQ
QLLTGVPCDDGVHQQALALGNWQMPERIVYVSCNPATLARDAGVLVDSGAYRCSSAGVIN
MFPHTAHVESIAVFDRIKPQ
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagaaacccaatccccaaaatcaccacaaagtacggtgcaaagtacagcccaa
agcacagcgccaaaagagtacccgctagacctgctgagcatagagtcgctggatatcgaa
gcccaaggcatagcccacaggcctgacggcaaggtggtatttattgaaggcgcgctccct
tttgagctggtcagcgccagcgtctaccgcaaaaaagccagctttgaaaaagctacgcta
ttggcagtgcaccgcgaatcttcccaacgcgtaagacccgcctgccctagctttggcatg
cataccggcgcatgcggcggctgcaaaatgcagcatttgcatgtcagcgctcaagttgct
gtcaagcagcgagtgttggaagacaacttactccacataggcaaactcaaatccgacaac
ctgctacgctctatcgaaggcccggcgtggaactaccgctaccgcgcccgcctgtcagtg
cgctatgtgcgtaaaaaaggcacggtattagttggttttcatgaacgcaaaagcgcttat
gtagctgacatgagcgaatgccatgtattgcccaaacatgtgagcgacatgctgctgccg
ctgcgcgcattgatctccagcatggatgcgaaagaaacgattccgcaaatcgagctagcc
tgcggcgactctgtgaccgccttggtactgcgccacatgcaagacttaagtgacaccgac
ttgacccgcttgcgcgcttttgccgtgcaaacaccaggcgtgcagtggtggctgcaatcg
ggtgggttagagactgtagtgttgcttgacgatgcgaccgaagagttgaactacggcttg
ccagagtttggcgttgtcatgccgtttagaccgactgactttacccaagtcaacccacac
atcaaccaagtactggtgtcacgcgcacttagactgctggcagtgcagccgcacgagcgc
gtgattgactggttttgcggtctgggtaacttcaccttgccgctggctacacgggctcaa
tctgtgctcggcattgaaggcagcgaagcactggtggcacgctcgcgcgagaactatctt
aaaaaccaagcagcacgcatagatcgtcacgccttagcgcccaccagtttcgaagtgcgc
aatttattcgagatgacgccggccctgttaagccgtgacggcagagctgacaaatggctg
gttgacccaccgcgcgaaggcgcgtttgaattattcaagtcactcgccgcactgcaccag
caactgctcaccggtgtgccttgtgacgatggcgtacatcagcaagcgctagcgctgggc
aactggcaaatgccagagcgaattgtctacgtcagctgcaaccctgcaaccttggcacgc
gatgctggcgtgctggtggacagcggcgcctaccgctgcagttcagctggcgtgatcaat
atgtttccgcataccgcacacgtggaatcaattgcggtgtttgaccgcatcaaacctcag
tag
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